Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2463 136 4e-27
>seq2463
Length=168562
Score = 136 bits (150), Expect = 4e-27
Identities = 253/370 (68%), Gaps = 1/370 (0%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| || || || |||| || | || ||| |||| || || | |||||| ||||| ||
Sbjct 99740 GGTGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCA 99799
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922
|| || || || || || || || |||||||| | || ||||| ||| | ||
Sbjct 99800 AATTGCTATAGAAAATGTCCATTCCGAAATGTACAGCTTGTTGATTGACACCTACATCCG 99859
Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982
| ||| |||| | |||| ||||| || || ||||| ||||| || || |
Sbjct 99860 TGATCCGGTGGAGCGTGATTTTCTGTTCAACGCAATTGAAACGATTCCGTGTGTGAAGAA 99919
Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042
|| || || ||||| |||| ||||||| | | | | | | || ||| || |
Sbjct 99920 AAAAGCAGATTGGGCTTTGCGTTGGATCGGTGACCGCCAATCACCATTTTCCGAACGTTT 99979
Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102
||| || ||||| || || || || | |||||||| ||||| ||||| | || || ||
Sbjct 99980 GGTTGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTG 100039
Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162
| | || || || ||||| |||||||| |||| |||||||||||| | ||||| | ||
Sbjct 100040 GTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCTCGTGA 100099
Query 117163 CGAGGGTCTG 117172
||| ||||||
Sbjct 100100 CGA-GGTCTG 100108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515202828909920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |