Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2463 136 4e-27 >seq2463 Length=168562 Score = 136 bits (150), Expect = 4e-27 Identities = 253/370 (68%), Gaps = 1/370 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| || || || |||| || | || ||| |||| || || | |||||| ||||| || Sbjct 99740 GGTGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCA 99799 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG 116922 || || || || || || || || |||||||| | || ||||| ||| | || Sbjct 99800 AATTGCTATAGAAAATGTCCATTCCGAAATGTACAGCTTGTTGATTGACACCTACATCCG 99859 Query 116923 CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982 | ||| |||| | |||| ||||| || || ||||| ||||| || || | Sbjct 99860 TGATCCGGTGGAGCGTGATTTTCTGTTCAACGCAATTGAAACGATTCCGTGTGTGAAGAA 99919 Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042 || || || ||||| |||| ||||||| | | | | | | || ||| || | Sbjct 99920 AAAAGCAGATTGGGCTTTGCGTTGGATCGGTGACCGCCAATCACCATTTTCCGAACGTTT 99979 Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 ||| || ||||| || || || || | |||||||| ||||| ||||| | || || || Sbjct 99980 GGTTGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTG 100039 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 | | || || || ||||| |||||||| |||| |||||||||||| | ||||| | || Sbjct 100040 GTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCTCGTGA 100099 Query 117163 CGAGGGTCTG 117172 ||| |||||| Sbjct 100100 CGA-GGTCTG 100108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202828909920