Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq684 96.9 5e-15 seq1852 87.8 3e-12 seq833 87.8 3e-12 >seq684 Length=410242 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| | ||||| || || |||||||| || ||| | || | ||| || Sbjct 338735 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 338676 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 338675 CGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 338616 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 ||| | | || ||||| || || |||||| Sbjct 338615 GCAACGTTTGATATTTGCTGGTAAGCAATTA 338585 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | ||||| ||||| || || |||| |||| | Sbjct 339365 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 339306 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || ||||| || |||||||| |||||||| || || || |||||| Sbjct 339305 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 339246 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 339245 CAGCGGCTTATTTTTGCTGG 339226 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || ||||| || || | || | ||| || | Sbjct 338170 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 338111 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| | | | ||| ||||||||||||||||| || || ||||| |||||| Sbjct 338110 GATACAATTGAAATTGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 338051 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||| | | |||||||| || || Sbjct 338050 CAACGTTTGATTTTTGCTGGTAA 338028 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124669 TTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAG 124728 ||||| |||||||||||| || ||| |||||||||| ||||||||||||||| |||| Sbjct 338549 TTTTTAAAGGAAAACAATTGGAAGATGGTCGAACATTGTCAGATTATAATATTCAGAAAG 338490 Query 124729 AATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || |||||||||| | ||| | || ||||| || ||| || Sbjct 338489 AAAGTACGCTGCATTTGGTGCTTCGTCTTCGGGGTGGCATGCAAATTT 338442 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | ||||| ||||| || || |||| |||| | Sbjct 367808 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 367749 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || ||||| || |||||||| |||||||| || || || |||||| Sbjct 367748 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 367689 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || | ||||||||||| || Sbjct 367688 CAGCGACTTATTTTTGCTGG 367669 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || ||| | || | ||| || Sbjct 337034 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATC 336975 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| ||||||||||||||||| || || ||||| ||||| Sbjct 336974 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 336915 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 336914 GCAACGTTTGATATTTGCTGG 336894 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || || || || ||||| || ||| | || | ||| | Sbjct 339707 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 339648 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| |||||||| |||||||| || || ||||| ||||| Sbjct 339647 AGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 339588 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 ||| | || ||||||||||| || Sbjct 339587 ACAGCGTCTCATTTTTGCAGGTAA 339564 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || ||||| || || ||| | || | ||| || Sbjct 366611 AATGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATC 366552 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 366551 CGATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 366492 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 || | | || ||||| || Sbjct 366491 GCAGCGTTTGATATTTGCTGG 366471 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || |||||||| || ||| | || | ||| || Sbjct 367181 AATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 367122 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 367121 CGACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 367062 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 367061 GCAACGTTTGATATTTGCTGG 367041 >seq1852 Length=8990 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| || || || ||||||||||| |||| ||||| || Sbjct 5663 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 5722 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 5723 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 5782 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||||| | || |||||||| || Sbjct 5783 CAAAGATTAATCTTTGCAGGTAA 5805 >seq833 Length=82521 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| || || || ||||||||||| |||| ||||| || Sbjct 79813 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 79872 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 79873 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 79932 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||||| | || |||||||| || Sbjct 79933 CAAAGATTAATCTTTGCAGGTAA 79955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755431995385600