Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq781 96.9 6e-15
>seq781
Length=403579
Score = 96.9 bits (106), Expect = 6e-15
Identities = 239/361 (66%), Gaps = 5/361 (1%)
Strand=Plus/Plus
Query 135575 AAACTATAGGTATTCCTATTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTAC 135634
||| ||| || ||| ||| | | |||| ||||| |||| | |||||| ||
Sbjct 210748 AAATTATCCGTCTTCGTAT--ACAGAGATGCTGACGAATGGATGGCTTGGAAACAACGTG 210805
Query 135635 CCGATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCT 135694
|||||| || | || || |||| || ||||||| ||| |||| | || ||||| |
Sbjct 210806 GTGATCCTATTCTTCACGTACAACTAAGACGATGGGCAGATATTTTGGTGATTGCGCCAT 210865
Query 135695 TAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTA 135754
| |||||| || | || ||||| | ||||| || || ||||||||| | || |
Sbjct 210866 TGGACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTATTAACAAGTG 210925
Query 135755 TTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTA 135814
| || ||||| |||||| || || || | | ||||| ||||||||||| |
Sbjct 210926 TGGTTAGAGCTTGGGATTGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACA 210985
Query 135815 TGTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATATATG---GGTTTCA 135871
|||||||||| || || || | | || || || | | | ||| || || || ||||
Sbjct 210986 TGTGGGAACACCCGATAACGTATGACCAGATGGACAAGCTGAAAAATTTGTTTGGATTCA 211045
Query 135872 TAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGG 135931
|||| | ||||| || || || || || || ||| || ||||||||||||
Sbjct 211046 AAGAAGTTCCTTGCATCGAGAAGGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGG 211105
Query 135932 C 135932
|
Sbjct 211106 C 211106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923167465421680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |