Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq432 116 4e-21 seq964 109 6e-19 seq1879 107 2e-18 seq413 104 3e-17 >seq432 Length=117168 Score = 116 bits (128), Expect = 4e-21 Identities = 87/100 (87%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 60042 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGT 60101 |||| || ||||| ||||| || |||| |||| ||||||||||||| |||| ||||||| Sbjct 73413 AAATGAA-GTTTA--AAAAAATTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGT 73357 Query 60102 GACAGGCGGACATACTCACCACTATACTACCGAGGATTGA 60141 ||||||||| ||||||||||||||||||||||||| ||| Sbjct 73356 GACAGGCGGGAATACTCACCACTATACTACCGAGGACTGA 73317 >seq964 Length=1190084 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| ||||||||||||| |||| |||||||||||||||| ||||| Sbjct 910610 AAAAAGTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 910551 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 910550 CACCACTATACTACCGAGGA 910531 >seq1879 Length=307288 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 || |||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||| Sbjct 143725 ATATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCAC 143666 Query 60121 CACTATACTACCGAGGA 60137 ||||||||||||||||| Sbjct 143665 CACTATACTACCGAGGA 143649 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 144398 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 144339 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 144338 TACTACCGAGGAT 144326 >seq413 Length=118473 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 49300 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49241 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 49240 TACTACCGAGGA 49229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571799430495760