Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq147 136 4e-27 seq2463 131 1e-25 seq684 86.0 6e-12 >seq147 Length=144011 Score = 136 bits (150), Expect = 4e-27 Identities = 245/358 (68%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || ||||| || || || || || | | || || ||||| | | ||| ||||| || Sbjct 32797 TTATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 32738 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || |||||||| ||||||| |||| ||||| |||||||||||||| |||| | ||| Sbjct 32737 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 32678 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | |||| | ||| |||||||| || || || || ||||| | ||||| ||| Sbjct 32677 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCC 32618 Query 22286 ATATTTATCAATGTACGCAT-----CGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 || | ||| |||||| || |||||||| || |||||||||| || | | Sbjct 32617 ATGTCTAT-----GACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTA 32563 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 |||| |||||| ||||||||| || | || || || ||| ||||| ||||| Sbjct 32562 TCTCAGCCGGTATTGATTCGATCGATTGAATAGAACCTTTGTTGGCGATGATTTCATTTT 32503 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 | | || || | ||| | ||| | || ||||||||| | || |||| | || || Sbjct 32502 TGAGCGATTCATCCCAAAGACCCAATTCGACCAAATCTTTCATCAAATGATGATTGAC 32445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 23335 GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCG 23394 |||| ||||| ||| |||| || ||||| |||||||| || ||||| |||| || | Sbjct 31244 GTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGGGCGTAAAACAAATCTCT 31185 Query 23395 GGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGC 23454 ||| | || || |||| |||||||||||| || | ||| || || | ||| || Sbjct 31184 GGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGC 31125 Query 23455 ATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| || || | ||||| |||||||| || ||||||| Sbjct 31124 GTGCCAAGGTTCCAAATAAACCGCAAACGCCCCAGGTCTCT 31084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | ||||| | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 30846 GCTCGAATGCAATGAACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 30787 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 | ||| | |||||||| ||||| ||||||||||| ||| ||| || || ||||| Sbjct 30786 TCTTTTAATGTGTCGTATATGCCTTCGATGCTGTCTGATTTCATCGTGATCAGAAAACA 30728 >seq2463 Length=168562 Score = 131 bits (144), Expect = 1e-25 Identities = 254/370 (69%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||| ||||||| |||||| | |||||||| || || | | ||| || || || || Sbjct 99740 GGTGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCA 99799 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | || || ||||| || ||||| |||||||| | | || || || ||| | Sbjct 99800 AATTGCTATAGAAAATGTCCATTCCGAAATGTACAGCTTGTTGATTGACACCTACATCCG 99859 Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCCGCGATCG 57912 || | ||| ||| || ||||||||||| || ||||| || || | Sbjct 99860 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCAATTGAAACGATTCCGTGTGTGA 99915 Query 57913 CCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAG 57971 || || ||||| ||| | | ||||| | ||||| | | || |||| Sbjct 99916 AGAAAAAAGCAGATTGGGCTTTGCGTTGGATCGGTGACCGCCAATCAC-CATTTTCCGAA 99974 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 | | | |||||||| || || |||||||| |||||||| |||||||| ||| |||| Sbjct 99975 CGTTTGGTTGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGTCAATT 100034 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||| |||| || || |||||||||||||| |||| || |||||||||||||| || Sbjct 100035 TTCTGGTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCT 100094 Query 58092 CGCGACGAGG 58101 || ||||||| Sbjct 100095 CGTGACGAGG 100104 >seq684 Length=410242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||| ||||| | || || ||||| ||| Sbjct 337603 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 337544 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | |||| || |||||||| | || || || ||| Sbjct 337543 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAGGAAGGAATTCCACCAGATCAG 337484 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | ||||| ||||| Sbjct 337483 CAACGTTTGATATTTGCTGG 337464 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||| || ||||| | || || ||||| ||| Sbjct 366610 ATGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATCC 366551 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | |||| || || ||||| | || || || ||| Sbjct 366550 GATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366491 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||| | ||||| ||||| Sbjct 366490 CAGCGTTTGATATTTGCTGG 366471 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||| ||||| | || || ||||| ||| Sbjct 337315 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 337256 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| ||| || || || | || || || ||| Sbjct 337255 GACACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 337196 Query 31313 CAGCGTCTAATATTCGCTGG 31332 |||||| | || || || || Sbjct 337195 CAGCGTTTGATTTTTGCCGG 337176 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||| ||||| | || || ||||| ||| Sbjct 367180 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 367121 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | |||| || || ||||| | || || || ||| Sbjct 367120 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 367061 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | ||||| ||||| Sbjct 367060 CAACGTTTGATATTTGCTGG 367041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752235772640