Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1847 93.3 8e-14 >seq1847 Length=328337 Score = 93.3 bits (102), Expect = 8e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || ||||||||||| || |||||| | ||||||||||| || | || | || ||| Sbjct 168244 TTTTGGAGAGGAGTGGTTGAAGAATTGCTTTGGTTCATCAGTGGAAGCACGAATGCGAAA 168303 Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368 | | | ||||||| | |||||||| | | ||| || | |||||||||||| Sbjct 168304 CAGCTTTCAGAGAAGAATGTTAACATCTGGGATGGAAATTCTTCCAGAGAATTTTTGGAC 168363 Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428 |||||||| | ||| || | ||| || || ||||| || || || || || |||||| Sbjct 168364 AGTAGAGGACTGTACAATTATGAAGAAGGTGACTTGGGGCCTGTTTATGGCTTTCAATGG 168423 Query 35429 CGTCATTTTGG 35439 || || ||||| Sbjct 168424 CGCCACTTTGG 168434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989551769867610