Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq147 123 2e-23 >seq147 Length=144011 Score = 123 bits (136), Expect = 2e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 37930 TATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACAC 37989 |||||||| | ||| |||| ||||| | ||| |||||||||||||| || ||| Sbjct 31321 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCAC 31262 Query 37990 ATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAAT 38049 || || ||||| ||| | || ||| | ||| | ||| |||| |||||||| ||| | Sbjct 31261 ATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGG 31202 Query 38050 GCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGA 38109 || ||| |||||| ||| ||| | ||||||| | ||| |||||| | | ||| Sbjct 31201 GCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGA 31142 Query 38110 AAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 ||||| ||||| || |||||||| ||||| | ||||| || | || || ||||| Sbjct 31141 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCCAGGTCT 31086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| |||| | ||| | || ||||||| ||| ||||| |||||| Sbjct 32794 TCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCAGTT 32735 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || |||| ||||| |||||||| |||| ||| || || | || | Sbjct 32734 TTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGCTCG 32675 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | || | || ||| || || ||| || || || || || || ||||| ||||| Sbjct 32674 GCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCCATG 32615 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 |||| | |||||||| || || ||||||||||| || || Sbjct 32614 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 32574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 ||| ||||| ||||| ||| ||| ||||| | || |||| |||||| || || |||| Sbjct 30826 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTTAATGTGTCGTATAT 30767 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411 ||||| || ||||| || || | | | ||||||||| || || || || Sbjct 30766 GCCTTCGATGCTGTCTGATTTCATCGTGATCAGAAAACAACTGCTCAACTGTGGTC-TGC 30708 Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470 | || ||||| || || | ||||| || || ||| ||||||||||||| |||| ||| Sbjct 30707 ATGTACCGGCATTGAACAGCGTAGGTGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 30648 Query 38471 TATATGT 38477 |||| || Sbjct 30647 TATAAGT 30641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468509912624480