Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq147 123 2e-23
>seq147
Length=144011
Score = 123 bits (136), Expect = 2e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 37930 TATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACAC 37989
|||||||| | ||| |||| ||||| | ||| |||||||||||||| || |||
Sbjct 31321 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCAC 31262
Query 37990 ATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAAT 38049
|| || ||||| ||| | || ||| | ||| | ||| |||| |||||||| ||| |
Sbjct 31261 ATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGG 31202
Query 38050 GCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGA 38109
|| ||| |||||| ||| ||| | ||||||| | ||| |||||| | | |||
Sbjct 31201 GCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGA 31142
Query 38110 AAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165
||||| ||||| || |||||||| ||||| | ||||| || | || || |||||
Sbjct 31141 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCCAGGTCT 31086
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||||| |||| | ||| | || ||||||| ||| ||||| ||||||
Sbjct 32794 TCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCAGTT 32735
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || || |||| ||||| |||||||| |||| ||| || || | || |
Sbjct 32734 TTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGCTCG 32675
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
| || | || ||| || || ||| || || || || || || ||||| |||||
Sbjct 32674 GCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCCATG 32615
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010
|||| | |||||||| || || ||||||||||| || ||
Sbjct 32614 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 32574
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351
||| ||||| ||||| ||| ||| ||||| | || |||| |||||| || || ||||
Sbjct 30826 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTTAATGTGTCGTATAT 30767
Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411
||||| || ||||| || || | | | ||||||||| || || || ||
Sbjct 30766 GCCTTCGATGCTGTCTGATTTCATCGTGATCAGAAAACAACTGCTCAACTGTGGTC-TGC 30708
Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470
| || ||||| || || | ||||| || || ||| ||||||||||||| |||| |||
Sbjct 30707 ATGTACCGGCATTGAACAGCGTAGGTGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 30648
Query 38471 TATATGT 38477
|||| ||
Sbjct 30647 TATAAGT 30641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468509912624480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |