Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2463 104 2e-17
seq684 93.3 4e-14
seq147 82.4 8e-11
>seq2463
Length=168562
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591
||||||| |||| | ||||||||||| ||||| | |||||||| ||| ||||
Sbjct 99886 TCAACGCAATTGAAACGATTCCGTGTGTGAAGAAAAAAGCAGATTGGGCTTTGCGTTGGA 99945
Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651
||| || | || | | ||| |||||||| |||| ||||| || || ||||||
Sbjct 99946 TCGGTGACCGCCAATCACCATTTTCCGAACGTTTGGTTGCGTTCGCAGCTGTTGAAGGTA 100005
Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711
| || ||||| || || || ||| |||| || | | |||| ||| | |||||||
Sbjct 100006 TTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCCG 100065
Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748
| | || || |||||||||||||| || || |||||
Sbjct 100066 GTTTGACCTTCAGCAACGAGTTGATCTCTCGTGACGA 100102
>seq684
Length=410242
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678
|| ||||||||| | |||| |||||||||||| || || || |||||||| || |||
Sbjct 338589 TGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATT 338648
Query 139679 TTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738
|| ||||| | ||| | |||||||| || ||||| || | || | || |||||
Sbjct 338649 TTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCA 338708
Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764
|| | || || ||||||||||||||
Sbjct 338709 GTGAGGGTCTTAACGAATATTTGCAT 338734
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| | |||| |||||||||||| || || || |||||||| || |||||
Sbjct 366754 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 366813
Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
||||| | ||| | ||| || | || ||||| || | ||| | || || || || |
Sbjct 366814 CTTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAA 366873
Query 139743 ACGTTTTTACGAATATTTGCAT 139764
|||||| ||||| ||||||||
Sbjct 366874 GCGTTTTAACGAAAATTTGCAT 366895
>seq147
Length=144011
Score = 82.4 bits (90), Expect = 8e-11
Identities = 112/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 152760 AAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATC 152819
||||||||||| || || || || || | | ||||||||| | |||| ||||| ||
Sbjct 32752 AAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAAT 32693
Query 152820 TTAGCCAAAGTAGGG-TCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGC 152878
|||| || ||| ||| ||||| |||| | || ||||| || ||| ||||| || ||
Sbjct 32692 TTAG-CATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGC 32634
Query 152879 GCCTCTATCTGCTGCCATGTCGATCATGAATTTT 152912
|| || || || |||||||| || | | |||||
Sbjct 32633 TCCCCTTTCGGCAGCCATGTCTATGACGCATTTT 32600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496048237566400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |