Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2463 104 2e-17 seq684 93.3 4e-14 seq147 82.4 8e-11 >seq2463 Length=168562 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 ||||||| |||| | ||||||||||| ||||| | |||||||| ||| |||| Sbjct 99886 TCAACGCAATTGAAACGATTCCGTGTGTGAAGAAAAAAGCAGATTGGGCTTTGCGTTGGA 99945 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 ||| || | || | | ||| |||||||| |||| ||||| || || |||||| Sbjct 99946 TCGGTGACCGCCAATCACCATTTTCCGAACGTTTGGTTGCGTTCGCAGCTGTTGAAGGTA 100005 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711 | || ||||| || || || ||| |||| || | | |||| ||| | ||||||| Sbjct 100006 TTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCCG 100065 Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748 | | || || |||||||||||||| || || ||||| Sbjct 100066 GTTTGACCTTCAGCAACGAGTTGATCTCTCGTGACGA 100102 >seq684 Length=410242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678 || ||||||||| | |||| |||||||||||| || || || |||||||| || ||| Sbjct 338589 TGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATT 338648 Query 139679 TTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 || ||||| | ||| | |||||||| || ||||| || | || | || ||||| Sbjct 338649 TTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCA 338708 Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764 || | || || |||||||||||||| Sbjct 338709 GTGAGGGTCTTAACGAATATTTGCAT 338734 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| | |||| |||||||||||| || || || |||||||| || ||||| Sbjct 366754 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 366813 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||||| | ||| | ||| || | || ||||| || | ||| | || || || || | Sbjct 366814 CTTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAA 366873 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 |||||| ||||| |||||||| Sbjct 366874 GCGTTTTAACGAAAATTTGCAT 366895 >seq147 Length=144011 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 152760 AAATAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATC 152819 ||||||||||| || || || || || | | ||||||||| | |||| ||||| || Sbjct 32752 AAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAAT 32693 Query 152820 TTAGCCAAAGTAGGG-TCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGC 152878 |||| || ||| ||| ||||| |||| | || ||||| || ||| ||||| || || Sbjct 32692 TTAG-CATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGC 32634 Query 152879 GCCTCTATCTGCTGCCATGTCGATCATGAATTTT 152912 || || || || |||||||| || | | ||||| Sbjct 32633 TCCCCTTTCGGCAGCCATGTCTATGACGCATTTT 32600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048237566400