Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq684 95.1 1e-14 seq2463 82.4 8e-11 seq147 82.4 8e-11 >seq684 Length=410242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 143038 TTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAAT 143097 ||| ||||||||| | |||| |||||||||||| || || || |||||||| || || Sbjct 338588 TTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTAT 338647 Query 143098 TTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCC 143157 ||| ||||| | ||| | ||||| | ||||| ||||| | ||| | || ||||| Sbjct 338648 TTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCC 338707 Query 143158 GGTCAATGTTTTTACGAATATTTGCAT 143184 || | || || |||||||||||||| Sbjct 338708 AGTGAGGGTCTTAACGAATATTTGCAT 338734 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||||||| | |||| |||||||||||| || || || || ||||| || |||||| Sbjct 336892 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 336951 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||||| | || | ||||| | ||||||||||| | ||| | || ||||| || | Sbjct 336952 CTTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGA 337011 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 || || ||||| |||||||| Sbjct 337012 GGGTCTTAACGAAAATTTGCAT 337033 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | |||| |||||||||||| || || || |||||||| || |||||| Sbjct 337744 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTA 337803 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||| | ||||| ||||| | ||| | || || || || Sbjct 337804 CCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 337863 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| |||||||| Sbjct 337864 AGCGTTTTAACGAAAATTTGCAT 337886 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | |||||||| ||||||||||| || || |||||||| || |||||| Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | ||||| | || ||| ||||| | ||| | || || || || Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||| ||||| Sbjct 368127 AGAGTTTTCACAAATATCTGCAT 368149 >seq2463 Length=168562 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 50411 CCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAG 50470 |||||||||| || ||||| || ||||||||| | || |||||||| ||||| || Sbjct 99970 CCGAACGTTTGGTTGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCGGCAGCTTCGCGT 100029 Query 50471 CCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGA 50530 | || || | | |||| |||| | |||||||| | || || ||||||||||||| Sbjct 100030 CAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGA 100089 Query 50531 TTTCGCGCGACGA 50543 | || || ||||| Sbjct 100090 TCTCTCGTGACGA 100102 >seq147 Length=144011 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 156182 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 156241 ||||||||||| || ||||| || || | |||||| ||||| | |||| ||||| || | Sbjct 32752 AAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAAT 32693 Query 156242 TTAGGCAAAGTAGGG-TTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGC 156300 ||| ||| ||| ||| | || |||| | || ||||| || ||| || || || || Sbjct 32692 TTA-GCATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGC 32634 Query 156301 TCCCCTGTCTGCTGCCATTTCAAT 156324 |||||| || || ||||| || || Sbjct 32633 TCCCCTTTCGGCAGCCATGTCTAT 32610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506998289617440