Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq147 96.9 5e-15 >seq147 Length=144011 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGC-TGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || ||||| ||| | | || | || | || || ||||||||||| || || Sbjct 32574 TACAAGACGGTTTGGGAAATTTCC-CAAAAATGCGTCATAGACATGGCTGCCGAAAGGGG 32632 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | | ||||||||| || ||||| ||| | || |||||||||||| ||| | Sbjct 32633 AGCTTTCATTGACCAATCCCAGTCGTTGAATATTCACATTGCCGAGCCCAACTATGCTAA 32692 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 |||| ||||| || || |||| ||||| | || || || || || ||||||||| | Sbjct 32693 ATTGACGTCGATGCATTTCTACGGCTGGAAGAGAGGTCTGAAAACTGGGATGTACTATTT 32752 Query 98219 GAGAACAAAG 98228 |||||| ||| Sbjct 32753 GAGAACCAAG 32762 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA--A 96963 || || || ||||||||||||||||| ||| | ||||| || || || ||| ||| | Sbjct 31101 GCGGTTTATTTGGAACCTTGGCACGCAGACATATTTGA--TTTTCTTGACGCGAAAAAGA 31158 Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023 || | ||| | ||||| ||||||| || |||||||| || || ||| | || ||| Sbjct 31159 ACACAGGCATCGAAGAAAACAGAGCCAGAGATTTGTTTTACGCCCTTTGGATACCTGATC 31218 Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083 | |||||||||||| | | | | || | ||| || |||||||| | | | Sbjct 31219 TATTCATGAAGCGCATTGAAGCTGACGGAGATTGGTCACTGATGTGCCCTCATGAATGTC 31278 Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | || || | |||| |||||||| |||||||| Sbjct 31279 CAGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 31312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035652843920