Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq684 82.4 5e-11 >seq684 Length=410242 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/151 (73%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC--GC 33278 |||||||| ||| |||||| ||||||||||| || | || || |||||||| || | Sbjct 338586 AATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGT 338645 Query 33279 TAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTT 33338 | ||| |||||| ||| || |||||| |||| || |||| ||| || |||| Sbjct 338646 ATTTTGCC--TTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTT 338703 Query 33339 TTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || ||||| |||||||| Sbjct 338704 TGCCAGTGAGGGTCTTAACGAATATTTGCAT 338734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318767724070716