Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1852 91.5 1e-13 seq833 91.5 1e-13 seq684 82.4 5e-11 >seq1852 Length=8990 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||||||||| |||||||| || | || | |||||||||||| |||||| Sbjct 6524 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 6465 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||| || | ||| ||||| | ||||| || || | || |||||||| || ||| Sbjct 6464 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6405 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || ||||| Sbjct 6404 AATGTTTTCACAAAAATCTGCAT 6382 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||||||||| |||||||| || | || | ||||| |||||| |||||| Sbjct 6237 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 6178 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 || || | ||| ||||| | ||||| || || | || |||||||| || ||| Sbjct 6177 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6118 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || ||||| Sbjct 6117 AATGTTTTCACAAAAATCTGCAT 6095 >seq833 Length=82521 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||||||||| |||||||| || | || | |||||||||||| |||||| Sbjct 80674 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 80615 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||| || | ||| ||||| | ||||| || || | || |||||||| || ||| Sbjct 80614 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80555 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || ||||| Sbjct 80554 AATGTTTTCACAAAAATCTGCAT 80532 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||||||||| |||||||| || | || | ||||| |||||| |||||| Sbjct 80387 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 80328 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 || || | ||| ||||| | ||||| || || | || |||||||| || ||| Sbjct 80327 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80268 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || ||||| Sbjct 80267 AATGTTTTCACAAAAATCTGCAT 80245 >seq684 Length=410242 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 || ||||| || | ||| || || || |||| | |||||||| ||| ||| || | Sbjct 339226 CCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 339285 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | ||| ||||||| |||||| || || | ||||| ||||| || || || Sbjct 339286 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 339345 Query 44102 GTCTTCACAAATATTTGCAT 44121 |||||||||||||| ||||| Sbjct 339346 GTCTTCACAAATATCTGCAT 339365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354766608768216