Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq684 123 6e-23
seq1852 122 2e-22
seq833 122 2e-22
>seq684
Length=410242
Score = 123 bits (136), Expect = 6e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || |||||||| || | ||||||||| || || ||||| |||||||||||||| ||
Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||||||||||| | | || ||||| || || || ||||| || || |||||
Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683
Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| |||||||||||||||||
Sbjct 339684 AGAGTTTTCACAAATATCTGCATTTT 339709
Score = 114 bits (126), Expect = 3e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| |||||||| || || | ||| ||||| || || |||||||||||||||||||| ||
Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| | || || | ||| || || || ||||| || || |||||
Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126
Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| |||||||||||||||||
Sbjct 368127 AGAGTTTTCACAAATATCTGCATTTT 368152
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| ||||| || |||||||| || |||||||| |
Sbjct 339226 CCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 339285
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||| || || | ||||| || || || ||||||||||| || || || || |
Sbjct 339286 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 339345
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| || ||||||||||||||
Sbjct 339346 GTCTTCACAAATATCTGCAT 339365
Score = 109 bits (120), Expect = 1e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | ||||||||| ||||| || |||||||| || |||||||| |
Sbjct 367669 CCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 367728
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||| || || | ||||| || || || ||||||||||| || || || || |
Sbjct 367729 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 367788
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| || ||||||||||||||
Sbjct 367789 GTCTTCACAAATATCTGCAT 367808
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | ||| ||||| || || |||||||||||||| || || || ||
Sbjct 366471 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366530
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | |||||| ||||| || || | || || ||||| ||||||||
Sbjct 366531 TTTACATTTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGA 366590
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 366591 GTCTTAACGAAAATTTGCATT 366611
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | ||| ||||| || || ||||| ||||||||||| || || ||
Sbjct 338312 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 338371
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| ||||| ||||| | || || || || ||||||||
Sbjct 338372 TTTACATTCTCTATTGTATCAGATGGTTCGACCTCCAAAGTGATGGTTTTCCCAGTAAGC 338431
Query 104540 GTTTTTACAAATATCTGCAT 104559
|| || ||||| || |||||
Sbjct 338432 GTCTTAACAAAAATTTGCAT 338451
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | ||| ||||| || || |||||||||||||| || || || ||
Sbjct 366184 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366243
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||||| ||||| ||||| || || | || || || || ||||||||
Sbjct 366244 TTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGC 366303
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || || |||||
Sbjct 366304 GTTTTAACGAAAATTTGCAT 366323
Score = 96.9 bits (106), Expect = 8e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469
|| ||| || |||||||| || | | || ||||| || || |||||||||||||| ||
Sbjct 338585 TAATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 338644
Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
|| || ||||||||||||||| || ||| ||||| || || | || || || ||
Sbjct 338645 TATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 338704
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || || || ||||| ||||||
Sbjct 338705 GCCAGTGAGGGTCTTAACGAATATTTGCATT 338735
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | || ||||| || || |||||||||||||| || || || ||
Sbjct 366756 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366815
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||||| ||||| ||||| || || | || || || || ||||||||
Sbjct 366816 TTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGC 366875
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || || |||||
Sbjct 366876 GTTTTAACGAAAATTTGCAT 366895
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | || ||||| || || |||||||||||||| ||||| ||
Sbjct 337744 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTA 337803
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||| ||||| |||| || || ||||| || || | || || || || ||||||
Sbjct 337804 CCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 337863
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || |||||
Sbjct 337864 AGCGTTTTAACGAAAATTTGCAT 337886
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| |||||||| | | ||| ||||| || || ||||| ||||||||||| || || ||
Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||||| || ||| ||||| || || | || || || || ||||| ||
Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | |||||||| || || ||||| |||||||| ||||| ||
Sbjct 338028 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 338087
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||| ||| |||| | ||||| ||||| || || | || || || || ||||||
Sbjct 338088 CCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTA 338147
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || |||||
Sbjct 338148 AGCGTCTTAACGAAAATTTGCAT 338170
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|||||||| || | | || ||||| || || |||||||||||||| || || || ||
Sbjct 367041 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 367100
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| || ||| ||||| || || | || || || || ||||| ||
Sbjct 367101 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 367160
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || || || || ||||||
Sbjct 367161 GTCTTAACGAAAATTTGCATT 367181
>seq1852
Length=8990
Score = 122 bits (134), Expect = 2e-22
Identities = 115/144 (80%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| |||| || || ||||||||||| || ||||| ||||||||||| |||
Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 5747
Query 104477 GCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| |||||||| | ||| || ||||| || |||||||| ||||| || |||||
Sbjct 5746 ACTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 5687
Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559
||| || || || |||||||||||
Sbjct 5686 AAGAGTCTTCACGAATATCTGCAT 5663
Score = 100 bits (110), Expect = 7e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| |||||||| || | | || |||||||| || || ||||||||||| ||||| ||
Sbjct 6524 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 6465
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||| |||||||| | ||||| || ||||| || | ||| || || || |||||
Sbjct 6464 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6405
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
| |||||| ||||| ||||||||
Sbjct 6404 AATGTTTTCACAAAAATCTGCAT 6382
>seq833
Length=82521
Score = 122 bits (134), Expect = 2e-22
Identities = 115/144 (80%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| |||| || || ||||||||||| || ||||| ||||||||||| |||
Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 79897
Query 104477 GCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| |||||||| | ||| || ||||| || |||||||| ||||| || |||||
Sbjct 79896 ACTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 79837
Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559
||| || || || |||||||||||
Sbjct 79836 AAGAGTCTTCACGAATATCTGCAT 79813
Score = 100 bits (110), Expect = 7e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| |||||||| || | | || |||||||| || || ||||||||||| ||||| ||
Sbjct 80674 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 80615
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||| |||||||| | ||||| || ||||| || | ||| || || || |||||
Sbjct 80614 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80555
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
| |||||| ||||| ||||||||
Sbjct 80554 AATGTTTTCACAAAAATCTGCAT 80532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151360899673736
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