Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq2042 102 7e-17
>seq2042
Length=751857
Score = 102 bits (112), Expect = 7e-17
Identities = 187/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Minus
Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562
||| ||||| ||||||||| |||| || | ||| || | ||| ||| | |||||
Sbjct 275364 GCCAGTGGAACCGAATCCGGCTGCTCCACGTTCTGTGTTGTCAAGGTGAGAT---TCTTC 275308
Query 5563 CACATCG---GGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618
||| | || || || || || || ||||| || || ||||| || || ||| |
Sbjct 275307 GACAATGTTCGGTAAAGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 275249
Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678
| || | |||||| | || ||| || ||||| | | || || || ||||| | ||| |
Sbjct 275248 TCACGTGGAAATCTTGGTCGCCAAAATTGAATACAATTACTCCAACATTGCCCCTGTAAT 275189
Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738
| ||||||| |||||||||||| | ||||||| ||||| | |||| ||| || || |
Sbjct 275188 CTGCGTCTACCACGCCCGCGCCGATGTCGATGCCATGCTTCAAAGCCAAGCCAGATCGAG 275129
Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768
| || | || || ||||| || | ||||
Sbjct 275128 GTGCAATACGACCATAGCAGCCGACAGGAA 275099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430041076645904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |