Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq2042 102 7e-17 >seq2042 Length=751857 Score = 102 bits (112), Expect = 7e-17 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||||||| |||| || | ||| || | ||| ||| | ||||| Sbjct 275364 GCCAGTGGAACCGAATCCGGCTGCTCCACGTTCTGTGTTGTCAAGGTGAGAT---TCTTC 275308 Query 5563 CACATCG---GGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618 ||| | || || || || || || ||||| || || ||||| || || ||| | Sbjct 275307 GACAATGTTCGGTAAAGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 275249 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || | |||||| | || ||| || ||||| | | || || || ||||| | ||| | Sbjct 275248 TCACGTGGAAATCTTGGTCGCCAAAATTGAATACAATTACTCCAACATTGCCCCTGTAAT 275189 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | ||||||| |||||||||||| | ||||||| ||||| | |||| ||| || || | Sbjct 275188 CTGCGTCTACCACGCCCGCGCCGATGTCGATGCCATGCTTCAAAGCCAAGCCAGATCGAG 275129 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | || | || || ||||| || | |||| Sbjct 275128 GTGCAATACGACCATAGCAGCCGACAGGAA 275099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430041076645904