Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1852 102 7e-17 seq833 102 7e-17 seq684 87.8 2e-12 >seq1852 Length=8990 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||||||||||||||||||||| |||||||| ||||| || || | |||||| |||| Sbjct 5798 CAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTACTTTTGA 5739 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | | || || || | || || ||||||||||||||||| | Sbjct 5738 CATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTAAGAGTCT 5679 Query 94992 TCACAAAGATCTGCAT 95007 |||| || |||||||| Sbjct 5678 TCACGAATATCTGCAT 5663 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| ||||||||| || ||||| ||||| || || | |||||| |||| | Sbjct 6230 CAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACCCTTCA 6171 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || |||| | || || || | ||||| ||||||||||| | |||| Sbjct 6170 CATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTT 6111 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| |||||||| Sbjct 6110 TCACAAAAATCTGCAT 6095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| ||||||||| || ||||| |||||||| || | |||||| | || | Sbjct 6517 CAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTACCTTTCA 6458 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || |||| | || || || | ||||| ||||||||||| | |||| Sbjct 6457 CATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTT 6398 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| |||||||| Sbjct 6397 TCACAAAAATCTGCAT 6382 >seq833 Length=82521 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||||||||||||||||||||| |||||||| ||||| || || | |||||| |||| Sbjct 79948 CAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTACTTTTGA 79889 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | | || || || | || || ||||||||||||||||| | Sbjct 79888 CATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTAAGAGTCT 79829 Query 94992 TCACAAAGATCTGCAT 95007 |||| || |||||||| Sbjct 79828 TCACGAATATCTGCAT 79813 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| ||||||||| || ||||| ||||| || || | |||||| |||| | Sbjct 80380 CAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACCCTTCA 80321 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || |||| | || || || | ||||| ||||||||||| | |||| Sbjct 80320 CATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTT 80261 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| |||||||| Sbjct 80260 TCACAAAAATCTGCAT 80245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||| ||||||||| || ||||| |||||||| || | |||||| | || | Sbjct 80667 CAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTACCTTTCA 80608 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | || |||| | || || || | ||||| ||||||||||| | |||| Sbjct 80607 CATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTT 80548 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| |||||||| Sbjct 80547 TCACAAAAATCTGCAT 80532 >seq684 Length=410242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || || | |||||||||||| ||||| |||||||| || | |||||| | || | Sbjct 337751 CAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCTTTCA 337810 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||||||| | || || || | ||||||||||| |||||||| |||| Sbjct 337811 CATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTT 337870 Query 94992 TCACAAAGATCTGCATGC 95009 | || || || ||||||| Sbjct 337871 TAACGAAAATTTGCATGC 337888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448276955547120