Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2541 190 3e-44 seq1923 163 4e-36 seq177 141 1e-29 seq1834 140 5e-29 seq1761 140 5e-29 seq964 138 2e-28 >seq2541 Length=159626 Score = 190 bits (210), Expect = 3e-44 Identities = 206/273 (75%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||| || |||||||| ||||||||||| ||||| || || Sbjct 92353 CGCGAAGCGTCATCGCAAAGTTCTACGTGATAACATTCAAGGAATCACGAAGCCTGCGAT 92412 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| |||||||| || |||||| || || ||| | |||||||| | Sbjct 92413 TCGACGTTTGGCTCGCCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 92472 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| |||||| |||||| | | ||| | | ||||||| | || ||| Sbjct 92473 TCGAGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTACTGCGA 92532 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | || |||||||| ||||||| | || ||||| |||||| | ||||| Sbjct 92533 ACACGCTAAAAGGAAAACTGTCACAGCCATGGACGTTGTTTATGCGTTGAAAAGACAAGG 92592 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||| | |||||||| || || |||||| ||| Sbjct 92593 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 92625 >seq1923 Length=283174 Score = 163 bits (180), Expect = 4e-36 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||| | | | | | || ||||| || |||||||| || |||||||| || Sbjct 22279 GCTAAGCGTCATAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAGCCAGCAATT 22220 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||||||||||||||| |||||| | || || || | |||||||||| Sbjct 22219 CGGCGTTTGGCTCGTCGTGGTGGAGTAAAGCGTATTTCCGGCTTAATATATGAAGAGACG 22160 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||| || | | | |||| | | |||||| | ||| |||| Sbjct 22159 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAG 22100 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||| ||||| || | |||||| | || ||||| | |||||||||||| Sbjct 22099 CATGCGAAACGTAAAACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 22040 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||| || || || Sbjct 22039 CGAACTATTTACGGCTTCGG 22020 >seq177 Length=137473 Score = 141 bits (156), Expect = 1e-29 Identities = 199/278 (72%), Gaps = 1/278 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || |||||||| || || ||||| || ||||| || Sbjct 18967 GCCAAACGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGGATCACGAAACCAGCAATT 18908 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | || || ||||||||||| || || | || ||| | |||||||| | | Sbjct 18907 CGTCGATTAGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGTTTGATTTATGAAGAAACT 18848 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||||| | | ||| | | |||||| | |||| ||| Sbjct 18847 CGAGCCGTGTTGAAATCCTTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGCGAA 18788 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| |||||| | |||||| | |||||||| |||||| | |||||| Sbjct 18787 CATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTCTATGCGTTGAAAAGACAAGGC 18728 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 || | || ||||||||||| ||||| ||| | |||| Sbjct 18727 CGAACCATCTATGGTTTTGGTGGTTAA-CTTTTCATCA 18691 >seq1834 Length=11467 Score = 140 bits (154), Expect = 5e-29 Identities = 198/277 (71%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || |||||||| || || ||||| || || || || Sbjct 290 GCCAAACGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGGATCACGAAACCGGCAATT 231 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||||||||| || || | || ||| | |||||||| | | Sbjct 230 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGTTTGATTTATGAAGAAACT 171 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||||||| |||||| | | ||| | | |||||| | |||| ||| Sbjct 170 CGAGCCGTTTTGAAATCCTTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGCGAA 111 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| |||||| | |||||| | |||||||| |||||| | |||||| Sbjct 110 CATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTCTATGCGTTGAAAAGACAAGGC 51 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 || | || |||||||| || ||||| ||| | ||| Sbjct 50 CGAACCATCTATGGTTTCGGTGGTTAA-CTTTTCATC 15 >seq1761 Length=22506 Score = 140 bits (154), Expect = 5e-29 Identities = 198/277 (71%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || |||||||| || || ||||| || || || || Sbjct 11373 GCCAAACGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGGATCACGAAACCGGCAATT 11314 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||||||||| || || | || ||| | |||||||| | | Sbjct 11313 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGTTTGATTTATGAAGAAACT 11254 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||||||| |||||| | | ||| | | |||||| | |||| ||| Sbjct 11253 CGAGCCGTTTTGAAATCCTTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGCGAA 11194 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| |||||| | |||||| | |||||||| |||||| | |||||| Sbjct 11193 CATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTCTATGCGTTGAAAAGACAAGGC 11134 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 || | || |||||||| || ||||| ||| | ||| Sbjct 11133 CGAACCATCTATGGTTTCGGTGGTTAA-CTTTTCATC 11098 >seq964 Length=1190084 Score = 138 bits (152), Expect = 2e-28 Identities = 194/271 (72%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | || |||||||| ||||||||||| || ||||| || Sbjct 387878 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCAGCGATT 387937 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| |||||||| || ||||| || || ||| | |||||||| | | Sbjct 387938 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATTTATGAAGAAACT 387997 Query 16553 CGTGATGTTTTGAAGATCTTCCT---CAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 || | ||| ||||| ||| || || | |||| | |||||| || || Sbjct 387998 CGAGCTGTGTTGAAATCCTTTCTTGAAAATATCGTT---CGAGATGCTGTCACGTACTGT 388054 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || || || ||| | || || || ||| | |||||| | ||||||||||||||| | ||| Sbjct 388055 GAACATGCCAAAAGGAAAACCGTAACCGCGATGGATGTTGTCTATGCATTGAAAAGACAA 388114 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || || | |||||||||||||| |||||| Sbjct 388115 GGTCGAACCATTTATGGTTTTGGTGGTTAAT 388145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072875831606