Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2541 190 3e-44
seq1923 163 4e-36
seq177 141 1e-29
seq1834 140 5e-29
seq1761 140 5e-29
seq964 138 2e-28
>seq2541
Length=159626
Score = 190 bits (210), Expect = 3e-44
Identities = 206/273 (75%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | ||| || |||||||| ||||||||||| ||||| || ||
Sbjct 92353 CGCGAAGCGTCATCGCAAAGTTCTACGTGATAACATTCAAGGAATCACGAAGCCTGCGAT 92412
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| ||||||| |||||||| || |||||| || || ||| | |||||||| |
Sbjct 92413 TCGACGTTTGGCTCGCCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 92472
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | ||| |||||| |||||| | | ||| | | ||||||| | || |||
Sbjct 92473 TCGAGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTACTGCGA 92532
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||| | || |||||||| ||||||| | || ||||| |||||| | |||||
Sbjct 92533 ACACGCTAAAAGGAAAACTGTCACAGCCATGGACGTTGTTTATGCGTTGAAAAGACAAGG 92592
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704
||| | |||||||| || || |||||| |||
Sbjct 92593 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 92625
>seq1923
Length=283174
Score = 163 bits (180), Expect = 4e-36
Identities = 192/260 (74%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||||||| | | | | | || ||||| || |||||||| || |||||||| ||
Sbjct 22279 GCTAAGCGTCATAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAGCCAGCAATT 22220
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| ||||||||||||||||||| |||||| | || || || | ||||||||||
Sbjct 22219 CGGCGTTTGGCTCGTCGTGGTGGAGTAAAGCGTATTTCCGGCTTAATATATGAAGAGACG 22160
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||||||| || | | | |||| | | |||||| | ||| ||||
Sbjct 22159 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAG 22100
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || |||||||| ||||| || | |||||| | || ||||| | ||||||||||||
Sbjct 22099 CATGCGAAACGTAAAACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 22040
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | ||||| || || ||
Sbjct 22039 CGAACTATTTACGGCTTCGG 22020
>seq177
Length=137473
Score = 141 bits (156), Expect = 1e-29
Identities = 199/278 (72%), Gaps = 1/278 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | | || |||||||| || || ||||| || ||||| ||
Sbjct 18967 GCCAAACGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGGATCACGAAACCAGCAATT 18908
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| | || || ||||||||||| || || | || ||| | |||||||| | |
Sbjct 18907 CGTCGATTAGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGTTTGATTTATGAAGAAACT 18848
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| |||||| | | ||| | | |||||| | |||| |||
Sbjct 18847 CGAGCCGTGTTGAAATCCTTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGCGAA 18788
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||| | ||||| |||||| | |||||| | |||||||| |||||| | ||||||
Sbjct 18787 CATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTCTATGCGTTGAAAAGACAAGGC 18728
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710
|| | || ||||||||||| ||||| ||| | ||||
Sbjct 18727 CGAACCATCTATGGTTTTGGTGGTTAA-CTTTTCATCA 18691
>seq1834
Length=11467
Score = 140 bits (154), Expect = 5e-29
Identities = 198/277 (71%), Gaps = 1/277 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | | || |||||||| || || ||||| || || || ||
Sbjct 290 GCCAAACGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGGATCACGAAACCGGCAATT 231
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| |||| || ||||||||||| || || | || ||| | |||||||| | |
Sbjct 230 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGTTTGATTTATGAAGAAACT 171
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | |||||||| |||||| | | ||| | | |||||| | |||| |||
Sbjct 170 CGAGCCGTTTTGAAATCCTTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGCGAA 111
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||| | ||||| |||||| | |||||| | |||||||| |||||| | ||||||
Sbjct 110 CATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTCTATGCGTTGAAAAGACAAGGC 51
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709
|| | || |||||||| || ||||| ||| | |||
Sbjct 50 CGAACCATCTATGGTTTCGGTGGTTAA-CTTTTCATC 15
>seq1761
Length=22506
Score = 140 bits (154), Expect = 5e-29
Identities = 198/277 (71%), Gaps = 1/277 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || |||||||| | | | || |||||||| || || ||||| || || || ||
Sbjct 11373 GCCAAACGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGGATCACGAAACCGGCAATT 11314
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| |||| || ||||||||||| || || | || ||| | |||||||| | |
Sbjct 11313 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGTTTGATTTATGAAGAAACT 11254
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | |||||||| |||||| | | ||| | | |||||| | |||| |||
Sbjct 11253 CGAGCCGTTTTGAAATCCTTCCTTGAAAATGTTGTTCGCGATGCTGTTACCTATTGCGAA 11194
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||| | ||||| |||||| | |||||| | |||||||| |||||| | ||||||
Sbjct 11193 CATGCGAAAAGGAAGACCGTCACCGCTATGGATGTTGTCTATGCGTTGAAAAGACAAGGC 11134
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709
|| | || |||||||| || ||||| ||| | |||
Sbjct 11133 CGAACCATCTATGGTTTCGGTGGTTAA-CTTTTCATC 11098
>seq964
Length=1190084
Score = 138 bits (152), Expect = 2e-28
Identities = 194/271 (72%), Gaps = 6/271 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||||| | | || |||||||| ||||||||||| || ||||| ||
Sbjct 387878 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCAGCGATT 387937
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||||| |||||||| || ||||| || || ||| | |||||||| | |
Sbjct 387938 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATTTATGAAGAAACT 387997
Query 16553 CGTGATGTTTTGAAGATCTTCCT---CAAGACCGTTATCCATGATGCTTTCCACTATACC 16609
|| | ||| ||||| ||| || || | |||| | |||||| || ||
Sbjct 387998 CGAGCTGTGTTGAAATCCTTTCTTGAAAATATCGTT---CGAGATGCTGTCACGTACTGT 388054
Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669
|| || || ||| | || || || ||| | |||||| | ||||||||||||||| | |||
Sbjct 388055 GAACATGCCAAAAGGAAAACCGTAACCGCGATGGATGTTGTCTATGCATTGAAAAGACAA 388114
Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|| || | |||||||||||||| ||||||
Sbjct 388115 GGTCGAACCATTTATGGTTTTGGTGGTTAAT 388145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072875831606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |