Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2463 87.8 2e-12 >seq2463 Length=168562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CC 21585 || || ||||||||||| | |||| |||||| ||||| || |||||||| || ||| || Sbjct 100075 AAGGTCAAACCGGGCATCAGGCCTCGCTTTTTCAACCAGAAAATTGACGCGAA-GCTGCC 100017 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 ||||||||||| || ||||| || || || ||||| || ||||| Sbjct 100016 GGAAAAGAAAATACCTTCAACAGCTGCGAACGCAACCAAACGTTC 99972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531883898852080