Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq147 107 2e-18 >seq147 Length=144011 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 || |||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 32797 TTATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 32738 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| ||||| |||| ||||| |||||||| ||| | ||| | ||| | || Sbjct 32737 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 32678 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || || || ||||||| || || ||| || ||||| |||||||| || |||||| Sbjct 32677 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCC 32618 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 62199 || | ||||| ||||| | ||||||||||| Sbjct 32617 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 32584 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 32372 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 32313 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || ||||| || ||||||||||| || || |||||||||||||| ||||||| ||| || Sbjct 32312 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 32253 Query 62456 ACTATTTCTAAGACCGTA 62473 ||||| ||||| || Sbjct 32252 CGAATTTCGCAGACCATA 32235 Score = 95.1 bits (104), Expect = 2e-14 Identities = 173/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 32109 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 32050 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 || | || || || ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 32049 TGCCAAATCGCAGCTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 31990 Query 62663 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62719 | |||| | | |||| || | ||||| ||||| | | ||| || || ||||| Sbjct 31989 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATCCGC 31933 Query 62720 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62779 || ||||| ||||||||||| || |||| ||| | |||||||| |||| || | | Sbjct 31932 CAACCCTTGCACACCAATACCAATTGGTCGATGACGTTTATTAGACCTTTCTGCCT---G 31876 Query 62780 AATAGGAT 62787 || ||||| Sbjct 31875 AAAAGGAT 31868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927405852720