Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1847 114 3e-20 seq147 84.2 6e-11 >seq1847 Length=328337 Score = 114 bits (126), Expect = 3e-20 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 ||||||||| || |||||||| || | ||||| ||| | || |||||| | || || Sbjct 168216 TTTTCCACTGCTTACAACAAAACGCGTCTTTTGGAGAGGAGTGGTTGAAGAATTGCTTTG 168275 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 ||| || | ||||| || ||||| || | ||| ||| || ||||| || || ||||| Sbjct 168276 GTTCATCAGTGGAAGCACGAATGCGAAACAGCTTTCAGAGAAGAATGTTAACATCTGGGA 168335 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGT--TGGTCTTGTCGACAACGAAGAAGGT 111491 ||||||| || | || ||| | || |||| || || | | | ||||||||| Sbjct 168336 TGGAAATTCTTCCAGAGAATTTTTGGA--CAGTAGAGGACTGTACAATTATGAAGAAGGT 168393 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532 || | || || ||||| || |||||||||||||||||||| Sbjct 168394 GACTTGGGGCCTGTTTATGGCTTTCAATGGCGCCACTTTGG 168434 >seq147 Length=144011 Score = 84.2 bits (92), Expect = 6e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||||||||| | ||| | || ||| || || || || ||||| |||||||| | | Sbjct 31092 GGGGCGTTTGCGGTTTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGA-CGC 31150 Query 363898 CGGAAA-AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| ||||| || | || ||| | || | ||| |||| || || |||||| | Sbjct 31151 GAAAAAGAACACAGGCATCGAAGAAAACAGAGCCAGAGATTTGTTTTACGCCCTTTGGAT 31210 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 |||| | || ||||||||| | || || | |||||||||| | ||||| || Sbjct 31211 ACCTGATCTATTCATGAAGCGCATTGAAGCTGACGGAGATTGGTCACTGATGTGCCCTCA 31270 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 ||||||||||| | | ||| | ||||| || || | || ||||||||||||| Sbjct 31271 TGAATGTCCAGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATACGAAAAGTA 31330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303311150587844