Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq684 87.8 2e-12 >seq684 Length=410242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || |||||| ||||||| | ||||| ||| | Sbjct 367808 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 367749 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| |||||| |||||||||||||| ||||| |||||| Sbjct 367748 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 367689 Query 24111 CAGAGACTGATTT 24123 ||| |||| |||| Sbjct 367688 CAGCGACTTATTT 367676 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || |||||| ||||||| | ||||| ||| | Sbjct 339365 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 339306 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| |||||| |||||||||||||| ||||| |||||| Sbjct 339305 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 339246 Query 24111 CAGAGACTGATTT 24123 ||| | || |||| Sbjct 339245 CAGCGGCTTATTT 339233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429922680314010