Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq147 111 2e-19
>seq147
Length=144011
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805
||||| || || ||||||| | || ||||||| | | ||||||| | | |
Sbjct 30200 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGATATAAATCATTGACC 30141
Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 30140 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 30081
Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925
| || ||||| |||||||||| |||||| ||||| | ||||| || |||| | ||
Sbjct 30080 AATATCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 30021
Query 63926 TCCAATTCTACCGTTGTTACACCATTATA 63954
|||||||| || ||||| ||||| | |||
Sbjct 30020 TCCAATTCGACAGTTGTGACACCTTGATA 29992
Score = 102 bits (112), Expect = 1e-16
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900
|| |||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 32797 TTATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 32738
Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960
||||| ||||| |||| ||||| |||||||| ||| | ||| | ||| | ||
Sbjct 32737 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 32678
Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020
|| || || || ||||||| || || ||| || ||||| |||||||| || ||||||
Sbjct 32677 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCC 32618
Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054
|| | ||| | ||||| | |||||||||||
Sbjct 32617 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 32584
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 32372 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 32313
Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310
|| ||||| || ||||||||||| || || |||||||||||||| ||||||| ||| ||
Sbjct 32312 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 32253
Query 62311 ACTATTTCTAAGACCGTA 62328
||||| ||||| ||
Sbjct 32252 CGAATTTCGCAGACCATA 32235
Score = 91.5 bits (100), Expect = 2e-13
Identities = 172/248 (69%), Gaps = 9/248 (4%)
Strand=Plus/Minus
Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 32109 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 32050
Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517
|| | || || || ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 32049 TGCCAAATCGCAGCTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 31990
Query 62518 TAG--ATCTTGCG-CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574
| |||| || |||| || | ||||| ||||| | | ||| || || || ||
Sbjct 31989 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATCCGC 31933
Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634
|| ||||| ||||||||||| || |||| ||| | |||||||| |||| || | |
Sbjct 31932 CAACCCTTGCACACCAATACCAATTGGTCGATGACGTTTATTAGACCTTTCTGCCT---G 31876
Query 62635 AATAGGAT 62642
|| |||||
Sbjct 31875 AAAAGGAT 31868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633611866343200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |