Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq147 111 2e-19 >seq147 Length=144011 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805 ||||| || || ||||||| | || ||||||| | | ||||||| | | | Sbjct 30200 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGATATAAATCATTGACC 30141 Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 30140 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 30081 Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925 | || ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 30080 AATATCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 30021 Query 63926 TCCAATTCTACCGTTGTTACACCATTATA 63954 |||||||| || ||||| ||||| | ||| Sbjct 30020 TCCAATTCGACAGTTGTGACACCTTGATA 29992 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 || |||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 32797 TTATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 32738 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| ||||| |||| ||||| |||||||| ||| | ||| | ||| | || Sbjct 32737 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGC 32678 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || || || ||||||| || || ||| || ||||| |||||||| || |||||| Sbjct 32677 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGCAGCC 32618 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054 || | ||| | ||||| | ||||||||||| Sbjct 32617 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 32584 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 32372 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 32313 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || ||||| || ||||||||||| || || |||||||||||||| ||||||| ||| || Sbjct 32312 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGTGCCAACAACAA 32253 Query 62311 ACTATTTCTAAGACCGTA 62328 ||||| ||||| || Sbjct 32252 CGAATTTCGCAGACCATA 32235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 32109 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 32050 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 || | || || || ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 32049 TGCCAAATCGCAGCTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 31990 Query 62518 TAG--ATCTTGCG-CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574 | |||| || |||| || | ||||| ||||| | | ||| || || || || Sbjct 31989 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATCCGC 31933 Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634 || ||||| ||||||||||| || |||| ||| | |||||||| |||| || | | Sbjct 31932 CAACCCTTGCACACCAATACCAATTGGTCGATGACGTTTATTAGACCTTTCTGCCT---G 31876 Query 62635 AATAGGAT 62642 || ||||| Sbjct 31875 AAAAGGAT 31868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633611866343200