Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq684 89.7 4e-13 seq2180 84.2 2e-11 >seq684 Length=410242 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 339365 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 339306 Query 25059 GACACTATCGAGTCACTGAAGCA--AAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| || || | || | ||| ||||||||||| || || || || | Sbjct 339305 GATACAATTGAGA-ACGTAAAAAGTAAGATTCAA-GACAAAGAAGGCATCCCTCCAGATC 339248 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 |||||||| |||||||||| || Sbjct 339247 AACAGCGGCTTATTTTTGCTGG 339226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 367808 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 367749 Query 25059 GACACTATCGAGTCACTGAAGCA--AAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| || || | || | ||| ||||||||||| || || || || | Sbjct 367748 GATACAATTGAGA-ACGTAAAAAGTAAGATTCAA-GACAAAGAAGGCATCCCTCCAGATC 367691 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 ||||||| |||||||||| || Sbjct 367690 AACAGCGACTTATTTTTGCTGG 367669 >seq2180 Length=222558 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||||||||| ||||| || | |||||||| || ||||| | ||||||| || Sbjct 48814 AGGGATTCCACCTGATCAACAACGATTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 48755 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188 || ||| ||||||||||||||| |||| Sbjct 48754 TACATTGGCCGATTACAATATTCAGAAAG 48726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314575227730