Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq684 102 7e-17
seq1852 87.8 2e-12
seq833 87.8 2e-12
seq147 84.2 2e-11
>seq684
Length=410242
Score = 102 bits (112), Expect = 7e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| ||
Sbjct 339709 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCC 339650
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || | | || || | ||| |||||||| || || ||||| ||||||||||||
Sbjct 339649 TCAGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 339590
Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361
||||| ||||| || ||||| || ||
Sbjct 339589 CAACAGCGTCTCATTTTTGCAGGTAA 339564
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || | || || ||||| ||||| | ||||| ||| | ||
Sbjct 337033 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 336974
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | ||| ||||||||||| || ||||| |||||||| |||||
Sbjct 336973 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 336914
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||| | |||||||| ||
Sbjct 336913 CAACGTTTGATATTTGCTGG 336894
Score = 100 bits (110), Expect = 2e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| |||||||| | || || ||||| ||||| | ||||||||| | |
Sbjct 337886 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 337827
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | ||| ||||||||||| || || || |||||||| |||||
Sbjct 337826 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 337767
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTA 22368
|||||| | || ||||| || || |||||
Sbjct 337766 CAACGTTTGATTTTTGCTGGTAAGTAGTTA 337737
Score = 100 bits (110), Expect = 2e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || | || || ||||| |||| | ||||||||| | |
Sbjct 338170 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 338111
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | | ||| ||||||||||| || ||||| |||||||| ||||||
Sbjct 338110 GATACAATTGAAATTGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 338051
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTA 22368
|||||| | || ||||| || || |||||
Sbjct 338050 CAACGTTTGATTTTTGCTGGTAAGTAGTTA 338021
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || ||||| |||||| | || || ||||| | ||||| ||||||||| ||
Sbjct 368152 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCC 368093
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | || || | || |||||||| || || || || ||||||||||||
Sbjct 368092 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGAT 368033
Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361
|| || ||||| |||||||| || ||
Sbjct 368032 CAGCAGCGTCTGATATTTGCTGGTAA 368007
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || | || || ||||| ||||| | ||||| ||| | ||
Sbjct 337603 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 337544
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | ||| ||||| ||||| ||||| || |||||||| |||||
Sbjct 337543 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAGGAAGGAATTCCACCAGATCAG 337484
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||| | |||||||| ||
Sbjct 337483 CAACGTTTGATATTTGCTGG 337464
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| ||| | || || || || ||||| | ||||||||| | ||
Sbjct 366610 ATGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATCC 366551
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| ||||| || || || |||||||| |||||
Sbjct 366550 GATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366491
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| ||| | |||||||| ||
Sbjct 366490 CAGCGTTTGATATTTGCTGG 366471
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| |||||||| | || || ||||| |||| | ||||||||| | |
Sbjct 366895 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366836
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| ||||| || || || |||||||| |||||
Sbjct 366835 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366776
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||| | |||||||| ||
Sbjct 366775 CAACGTTTGATATTTGCTGG 366756
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || | || || ||||| ||||| | ||||||||| | ||
Sbjct 367180 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 367121
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | ||| ||||| ||||| || || || |||||||| |||||
Sbjct 367120 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 367061
Query 22339 CAACGTCTTATATTTGCCGG 22358
|||||| | |||||||| ||
Sbjct 367060 CAACGTTTGATATTTGCTGG 367041
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || | || || ||||| ||||| | ||||||||| | ||
Sbjct 337315 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 337256
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || | ||| ||||| || || || ||||| |||||||| |||||
Sbjct 337255 GACACAATAGAAAATGTGAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 337196
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| ||| | || ||||||||
Sbjct 337195 CAGCGTTTGATTTTTGCCGG 337176
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| |||||||| | || || ||||| |||| | ||||||||| | |
Sbjct 366323 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366264
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| ||||| || || || |||||||| |||||
Sbjct 366263 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366204
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| ||| | |||||||| ||
Sbjct 366203 CAGCGTTTGATATTTGCTGG 366184
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| || | || || ||||| ||||| | || || ||| | |
Sbjct 338451 ATGCAAATTTTTGTTAAGACGCTTACTGGGAAAACCATCACTTTGGAGGTCGAACCATCT 338392
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || || || ||||| |||||||| |||||
Sbjct 338391 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 338332
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| ||| | |||||||| ||
Sbjct 338331 CAGCGTTTGATATTTGCTGG 338312
>seq1852
Length=8990
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 6095 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 6154
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | || ||||||||||| ||||| || ||||| || |||||
Sbjct 6155 GATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 6214
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
||||| | |||||||| || ||
Sbjct 6215 CAACGATTGATATTTGCTGGTAA 6237
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 6382 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 6441
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| || || || ||||| || |||||
Sbjct 6442 GATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCAG 6501
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
||||| | |||||||| || ||
Sbjct 6502 CAACGATTGATATTTGCTGGTAA 6524
>seq833
Length=82521
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 80245 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 80304
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | || ||||||||||| ||||| || ||||| || |||||
Sbjct 80305 GATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 80364
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
||||| | |||||||| || ||
Sbjct 80365 CAACGATTGATATTTGCTGGTAA 80387
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| |||||||| ||||| ||||| || ||||| |||| | ||||| || | |
Sbjct 80532 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 80591
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||||||||| || || || ||||| || |||||
Sbjct 80592 GATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCAG 80651
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
||||| | |||||||| || ||
Sbjct 80652 CAACGATTGATATTTGCTGGTAA 80674
>seq147
Length=144011
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 12/230 (5%)
Strand=Plus/Minus
Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838
|| |||||||| |||| |||||| | |||| |||||||| | |||||||||||| ||
Sbjct 32797 TTATCCACGGTGAATTGAATAGCTGTCACTGCTGGCTTGGTTCTCAAATAGTACATCCCA 32738
Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898
||||||| ||| || ||||| || | || |||| ||||| || ||| ||||
Sbjct 32737 GTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGG- 32679
Query 128899 TGACTCaaaaa----aaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGC 128954
||| || |||||| || || || ||| ||||| || | || | |||||
Sbjct 32678 ---CTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCTCCCCTTTCGGC 32622
Query 128955 AGCCATACCAAT--CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTA 129002
|||||| | || | |||||| |||||||| ||||| |||||
Sbjct 32621 AGCCATGTCTATGACGCATTTTT--GGGAAATTTCCCAAACCGTCTTGTA 32574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419714996564230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |