Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq684 118 2e-21 seq1852 111 3e-19 seq833 111 3e-19 >seq684 Length=410242 Score = 118 bits (130), Expect = 2e-21 Identities = 113/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | | ||| || || |||||||| |||||||| ||||| || |||||| Sbjct 337464 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTAT-TTTGCC 337522 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || ||||| | || |||||||||||| ||||||||||| || ||||| Sbjct 337523 TTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAG 337582 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| ||||| || |||||| Sbjct 337583 GGTCTTAACGAAAATTTGCATT 337604 Score = 118 bits (130), Expect = 2e-21 Identities = 119/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| ||||| || || ||||| | | ||| || || |||||||| ||||| || ||||| Sbjct 338585 TAATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 338644 Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 || |||||||| || || || ||||| | || ||| |||||||| |||||||||| Sbjct 338645 TAT-TTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTT 338703 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || ||||||||||| |||||||| |||||| Sbjct 338704 TGCCAGTGAGGGTCTTAACGAATATTTGCATT 338735 Score = 114 bits (126), Expect = 2e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | | ||| || || |||||||| || || || |||||||| |||||| Sbjct 336894 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAAT-TTTGCC 336952 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || ||| || ||||| | || |||||||||||| ||||||||||| || ||||| Sbjct 336953 TTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAG 337012 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| ||||| || |||||| Sbjct 337013 GGTCTTAACGAAAATTTGCATT 337034 Score = 111 bits (122), Expect = 3e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| | | || || ||||| | | ||| || || |||||||| ||||| || ||||| | Sbjct 367033 ACTACGTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTA 367092 Query 68374 TCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | |||||||| || ||| || ||||| | || ||| |||||||| ||||||||||| Sbjct 367093 T-TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 367151 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||||||||| ||||| || |||||| Sbjct 367152 CCAGTGAGGGTCTTAACGAAAATTTGCATT 367181 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||| ||| || || || || | | ||| || || |||||||| ||||| || ||||| Sbjct 337737 TAACTACTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 337796 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| || | || || ||| || ||||| | || ||| |||||||| ||||||||||| Sbjct 337797 AATTTTACCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTT 337856 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || ||||| || ||||| Sbjct 337857 CCCAGTAAGCGTTTTAACGAAAATTTGCAT 337886 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||||| ||| || || || || | | |||||| || |||||||| || || || ||||| Sbjct 338021 TAACTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 338080 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||| || | || || || || || || | || ||| |||||||||||||||||||| Sbjct 338081 AATTTTACCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTT 338140 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| || ||||| Sbjct 338141 CCCAGTAAGCGTCTTAACGAAAATTTGCAT 338170 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || ||||| || | || || ||||||||||| ||||| || || ||||| || Sbjct 368006 CTTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTT 368065 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| || || || ||||||| | ||| ||||||| || |||||||| || || Sbjct 368066 ACCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGT 368125 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||| || || || |||||||||||| Sbjct 368126 GAGAGTTTTCACAAATATCTGCATT 368150 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || | | || || || |||||||| || || || || || || |||||| Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTAT-TTTGCC 337234 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || ||||| | || ||| |||||||| ||||||||||| || ||||| Sbjct 337235 TTTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 337294 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| ||||| || |||||| Sbjct 337295 GGTCTTAACGAAAATTTGCATT 337316 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||| | ||||| ||||||||||| || || || || ||||| || Sbjct 339563 CTTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 339622 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || || || | ||||| | ||| ||||||| || |||||||| || || Sbjct 339623 ACCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 339682 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||| || || || |||||||||||| Sbjct 339683 GAGAGTTTTCACAAATATCTGCATT 339707 Score = 91.5 bits (100), Expect = 3e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| | | || || ||||| | | ||| || || |||||||| ||||| || ||||| | Sbjct 366748 ACTACGTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTA 366807 Query 68374 TCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | |||||||| || || || || || | || ||| |||||||||||||||||||| Sbjct 366808 T-TTTGCCTTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTC 366866 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || ||||| || ||||| Sbjct 366867 CCAGTAAGCGTTTTAACGAAAATTTGCAT 366895 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || ||||| | | || || || |||||||| ||||| || ||||| || |||||| Sbjct 366184 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTAT-TTTGCC 366242 Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || || || | || ||| |||||||||||||||||||| || || || Sbjct 366243 TTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAG 366302 Query 68441 GGTCTTGACGAATATCTGCAT 68461 || || ||||| || ||||| Sbjct 366303 CGTTTTAACGAAAATTTGCAT 366323 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || |||| ||||| || || || |||||||| |||||||||||||| Sbjct 367669 CCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 367728 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||| || || |||| | || ||||| | || || |||||||| || | Sbjct 367729 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 367788 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || ||||||||||| Sbjct 367789 GTCTTCACAAATATCTGCAT 367808 >seq1852 Length=8990 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | |||||| || || || |||||||||||||| || ||||| || Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||||||||||||| || ||| ||||| | || || |||||||| || Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686 Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| |||||||||||||| || Sbjct 5685 AGAGTCTTCACGAATATCTGCATAAT 5660 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 6237 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 6178 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||| || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 6177 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6118 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 6117 AATGTTTTCACAAAAATCTGCAT 6095 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || || ||||||||||| || |||||||| || Sbjct 6524 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 6465 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 6464 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6405 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 6404 AATGTTTTCACAAAAATCTGCAT 6382 >seq833 Length=82521 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || || | |||||| || || || |||||||||||||| || ||||| || Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||||||||||||| || ||| ||||| | || || |||||||| || Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836 Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| |||||||||||||| || Sbjct 79835 AGAGTCTTCACGAATATCTGCATAAT 79810 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || || |||||||||||||| |||||||| || Sbjct 80387 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 80328 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||| || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 80327 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80268 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 80267 AATGTTTTCACAAAAATCTGCAT 80245 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || ||||| | || ||| || || || ||||||||||| || |||||||| || Sbjct 80674 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 80615 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || || || || || || | || ||||||||||| ||||| |||||||| || Sbjct 80614 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80555 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | || || || || |||||||| Sbjct 80554 AATGTTTTCACAAAAATCTGCAT 80532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921593115448240