Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq684 118 2e-21
seq1852 111 3e-19
seq833 111 3e-19
>seq684
Length=410242
Score = 118 bits (130), Expect = 2e-21
Identities = 113/142 (80%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | | ||| || || |||||||| |||||||| ||||| || ||||||
Sbjct 337464 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTAT-TTTGCC 337522
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || ||||| | || |||||||||||| ||||||||||| || |||||
Sbjct 337523 TTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAG 337582
Query 68441 GGTCTTGACGAATATCTGCATT 68462
|||||| ||||| || ||||||
Sbjct 337583 GGTCTTAACGAAAATTTGCATT 337604
Score = 118 bits (130), Expect = 2e-21
Identities = 119/152 (78%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371
||| ||||| || || ||||| | | ||| || || |||||||| ||||| || |||||
Sbjct 338585 TAATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 338644
Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430
|| |||||||| || || || ||||| | || ||| |||||||| ||||||||||
Sbjct 338645 TAT-TTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTT 338703
Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
| || ||||||||||| |||||||| ||||||
Sbjct 338704 TGCCAGTGAGGGTCTTAACGAATATTTGCATT 338735
Score = 114 bits (126), Expect = 2e-20
Identities = 112/142 (79%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | | ||| || || |||||||| || || || |||||||| ||||||
Sbjct 336894 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAAT-TTTGCC 336952
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || ||||| | || |||||||||||| ||||||||||| || |||||
Sbjct 336953 TTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAG 337012
Query 68441 GGTCTTGACGAATATCTGCATT 68462
|||||| ||||| || ||||||
Sbjct 337013 GGTCTTAACGAAAATTTGCATT 337034
Score = 111 bits (122), Expect = 3e-19
Identities = 116/150 (77%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
||| | | || || ||||| | | ||| || || |||||||| ||||| || ||||| |
Sbjct 367033 ACTACGTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTA 367092
Query 68374 TCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
| |||||||| || ||| || ||||| | || ||| |||||||| |||||||||||
Sbjct 367093 T-TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 367151
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| ||||||||||| ||||| || ||||||
Sbjct 367152 CCAGTGAGGGTCTTAACGAAAATTTGCATT 367181
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371
||||| ||| || || || || | | ||| || || |||||||| ||||| || |||||
Sbjct 337737 TAACTACTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 337796
Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431
||| || | || || ||| || ||||| | || ||| |||||||| |||||||||||
Sbjct 337797 AATTTTACCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTT 337856
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || || || ||||| || |||||
Sbjct 337857 CCCAGTAAGCGTTTTAACGAAAATTTGCAT 337886
Score = 100 bits (110), Expect = 5e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371
||||| ||| || || || || | | |||||| || |||||||| || || || |||||
Sbjct 338021 TAACTACTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 338080
Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431
||| || | || || || || || || | || ||| ||||||||||||||||||||
Sbjct 338081 AATTTTACCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTT 338140
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || ||||| ||||| || |||||
Sbjct 338141 CCCAGTAAGCGTCTTAACGAAAATTTGCAT 338170
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || ||||| || | || || ||||||||||| ||||| || || ||||| ||
Sbjct 368006 CTTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTT 368065
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || || ||||||| | ||| ||||||| || |||||||| || ||
Sbjct 368066 ACCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGT 368125
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
||| || || || ||||||||||||
Sbjct 368126 GAGAGTTTTCACAAATATCTGCATT 368150
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
||||| || || | | || || || |||||||| || || || || || || ||||||
Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTAT-TTTGCC 337234
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || ||||| | || ||| |||||||| ||||||||||| || |||||
Sbjct 337235 TTTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 337294
Query 68441 GGTCTTGACGAATATCTGCATT 68462
|||||| ||||| || ||||||
Sbjct 337295 GGTCTTAACGAAAATTTGCATT 337316
Score = 91.5 bits (100), Expect = 3e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || ||||| | ||||| ||||||||||| || || || || ||||| ||
Sbjct 339563 CTTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 339622
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
| || || || || | ||||| | ||| ||||||| || |||||||| || ||
Sbjct 339623 ACCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 339682
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
||| || || || ||||||||||||
Sbjct 339683 GAGAGTTTTCACAAATATCTGCATT 339707
Score = 91.5 bits (100), Expect = 3e-13
Identities = 111/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373
||| | | || || ||||| | | ||| || || |||||||| ||||| || ||||| |
Sbjct 366748 ACTACGTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTA 366807
Query 68374 TCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
| |||||||| || || || || || | || ||| ||||||||||||||||||||
Sbjct 366808 T-TTTGCCTTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTC 366866
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || || || ||||| || |||||
Sbjct 366867 CCAGTAAGCGTTTTAACGAAAATTTGCAT 366895
Score = 86.0 bits (94), Expect = 1e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | | || || || |||||||| ||||| || ||||| || ||||||
Sbjct 366184 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTAT-TTTGCC 366242
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || || || | || ||| |||||||||||||||||||| || || ||
Sbjct 366243 TTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAG 366302
Query 68441 GGTCTTGACGAATATCTGCAT 68461
|| || ||||| || |||||
Sbjct 366303 CGTTTTAACGAAAATTTGCAT 366323
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || |||| ||||| || || || |||||||| ||||||||||||||
Sbjct 367669 CCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTACTT 367728
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| ||| ||| || || |||| | || ||||| | || || |||||||| || |
Sbjct 367729 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCAAC 367788
Query 68442 GTCTTGACGAATATCTGCAT 68461
||||| || |||||||||||
Sbjct 367789 GTCTTCACAAATATCTGCAT 367808
>seq1852
Length=8990
Score = 111 bits (122), Expect = 3e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | |||||| || || || |||||||||||||| || ||||| ||
Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
||||| ||||||||||||| || ||| ||||| | || || |||||||| ||
Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686
Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464
|| ||||| |||||||||||||| ||
Sbjct 5685 AGAGTCTTCACGAATATCTGCATAAT 5660
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || ||| || || || |||||||||||||| |||||||| ||
Sbjct 6237 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 6178
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|||| || || || || || | || ||||||||||| ||||| |||||||| ||
Sbjct 6177 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6118
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
| || || || || ||||||||
Sbjct 6117 AATGTTTTCACAAAAATCTGCAT 6095
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || ||| || || || ||||||||||| || |||||||| ||
Sbjct 6524 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 6465
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| || || || || || || | || ||||||||||| ||||| |||||||| ||
Sbjct 6464 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6405
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
| || || || || ||||||||
Sbjct 6404 AATGTTTTCACAAAAATCTGCAT 6382
>seq833
Length=82521
Score = 111 bits (122), Expect = 3e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | |||||| || || || |||||||||||||| || ||||| ||
Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
||||| ||||||||||||| || ||| ||||| | || || |||||||| ||
Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836
Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464
|| ||||| |||||||||||||| ||
Sbjct 79835 AGAGTCTTCACGAATATCTGCATAAT 79810
Score = 96.9 bits (106), Expect = 6e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || ||| || || || |||||||||||||| |||||||| ||
Sbjct 80387 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 80328
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|||| || || || || || | || ||||||||||| ||||| |||||||| ||
Sbjct 80327 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80268
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
| || || || || ||||||||
Sbjct 80267 AATGTTTTCACAAAAATCTGCAT 80245
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || ||| || || || ||||||||||| || |||||||| ||
Sbjct 80674 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 80615
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| || || || || || || | || ||||||||||| ||||| |||||||| ||
Sbjct 80614 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80555
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
| || || || || ||||||||
Sbjct 80554 AATGTTTTCACAAAAATCTGCAT 80532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921593115448240
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