Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1825 105 2e-17
seq684 102 2e-16
>seq1825
Length=902300
Score = 105 bits (116), Expect = 2e-17
Identities = 199/286 (70%), Gaps = 10/286 (3%)
Strand=Plus/Minus
Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426
||||| ||||| ||||| ||| ||||||||||||||| || || ||| || ||
Sbjct 349147 CCGAATTGGCCAATCGGCAGCAATATGTTGATGTTATTGCTGCCAACGAAATTATGAGCC 349088
Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486
| || | ||||| | |||| ||||||||||||| || || ||| || |||
Sbjct 349087 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCA 349028
Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGC 325542
||| |||| | ||| || |||||||| || |||| | ||||||||||| |
Sbjct 349027 ACGGAACCAGCAAGCTGAGCGACCTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAG 348970
Query 325543 TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCG 325602
|||| | | ||||| ||||| ||| || || |||||||| | ||| |||||||| ||
Sbjct 348969 TGAACAAA--ACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACG 348912
Query 325603 TTCCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647
|| || | | || ||||||||| | || |||||||||||
Sbjct 348911 CTCGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 348867
>seq684
Length=410242
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| ||||| || || |||||||||||| ||| ||||| ||||||||||| |||||
Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
|||| || ||||| || || || | ||| ||||| || || || || ||||| ||
Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 339684 AGAGTTTTCACAAATATCTGCATT 339707
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || ||||||||||| ||| ||| ||||||||||||||||| |||||
Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | ||| ||||| || || || || ||||| ||
Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 368127 AGAGTTTTCACAAATATCTGCATT 368150
Score = 96.9 bits (106), Expect = 8e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383
|||||| || || || || |||| ||| || ||| ||| |||||||||||||| ||
Sbjct 338585 TAATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 338644
Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443
||||| |||| || |||||||| | ||| | ||| ||||| | ||||| || ||
Sbjct 338645 TATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 338704
Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || || ||||| |||||||| ||||||
Sbjct 338705 GCCAGTGAGGGTCTTAACGAATATTTGCATT 338735
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||| |||||| ||| ||| |||||||||||||| || ||||| ||
Sbjct 366471 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366530
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || ||||| || | |||| | ||| ||||| | ||||| ||||| || || |||
Sbjct 366531 TTTACATTTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGA 366590
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| ||||| || ||||||
Sbjct 366591 GTCTTAACGAAAATTTGCATT 366611
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||| |||||| ||| ||| ||||| ||||||||||| ||||| ||
Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| |||||||| | ||| | ||| ||||| | ||||| || || || || ||
Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| ||||| || ||||||
Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||| |||||| ||| ||| |||||||||||||| || ||||| ||
Sbjct 366184 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366243
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || |||||||| | ||| | ||| ||||| | ||||| || ||||| || ||
Sbjct 366244 TTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGC 366303
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || ||||| || |||||
Sbjct 366304 GTTTTAACGAAAATTTGCAT 366323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179615979393476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |