Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1825 105 2e-17 seq684 102 2e-16 >seq1825 Length=902300 Score = 105 bits (116), Expect = 2e-17 Identities = 199/286 (70%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426 ||||| ||||| ||||| ||| ||||||||||||||| || || ||| || || Sbjct 349147 CCGAATTGGCCAATCGGCAGCAATATGTTGATGTTATTGCTGCCAACGAAATTATGAGCC 349088 Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486 | || | ||||| | |||| ||||||||||||| || || ||| || ||| Sbjct 349087 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCA 349028 Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGC 325542 ||| |||| | ||| || |||||||| || |||| | ||||||||||| | Sbjct 349027 ACGGAACCAGCAAGCTGAGCGACCTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAG 348970 Query 325543 TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCG 325602 |||| | | ||||| ||||| ||| || || |||||||| | ||| |||||||| || Sbjct 348969 TGAACAAA--ACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACG 348912 Query 325603 TTCCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647 || || | | || ||||||||| | || ||||||||||| Sbjct 348911 CTCGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 348867 >seq684 Length=410242 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || ||||| || || |||||||||||| ||| ||||| ||||||||||| ||||| Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 |||| || ||||| || || || | ||| ||||| || || || || ||||| || Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 339684 AGAGTTTTCACAAATATCTGCATT 339707 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || ||||||||||| ||| ||| ||||||||||||||||| ||||| Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | ||| ||||| || || || || ||||| || Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||||||| Sbjct 368127 AGAGTTTTCACAAATATCTGCATT 368150 Score = 96.9 bits (106), Expect = 8e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG 288383 |||||| || || || || |||| ||| || ||| ||| |||||||||||||| || Sbjct 338585 TAATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 338644 Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 ||||| |||| || |||||||| | ||| | ||| ||||| | ||||| || || Sbjct 338645 TATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 338704 Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| |||||||| |||||| Sbjct 338705 GCCAGTGAGGGTCTTAACGAATATTTGCATT 338735 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| ||| |||||||||||||| || ||||| || Sbjct 366471 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366530 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | |||| | ||| ||||| | ||||| ||||| || || ||| Sbjct 366531 TTTACATTTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGA 366590 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 366591 GTCTTAACGAAAATTTGCATT 366611 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| ||| ||||| ||||||||||| ||||| || Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| |||||||| | ||| | ||| ||||| | ||||| || || || || || Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| ||||| || |||||| Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||| |||||| ||| ||| |||||||||||||| || ||||| || Sbjct 366184 CCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 366243 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || |||||||| | ||| | ||| ||||| | ||||| || ||||| || || Sbjct 366244 TTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGC 366303 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| Sbjct 366304 GTTTTAACGAAAATTTGCAT 366323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179615979393476