Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1825 113 1e-19 >seq1825 Length=902300 Score = 113 bits (124), Expect = 1e-19 Identities = 231/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || ||||| |||| |||||| || ||| | || || | | || | ||||| ||| Sbjct 349198 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGG 349139 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||||| ||| ||||||||||||||| || || ||| || || | || | Sbjct 349138 CCAATCGGCAGCAATATGTTGATGTTATTGCTGCCAACGAAATTATGAGCCAAATTTATA 349079 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 ||||| | |||| ||||||||||||| || || ||| || |||||| |||| Sbjct 349078 ATGGTGCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCA 349019 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATAT 297672 | ||| || |||||||| || |||| | ||||||||||| | |||| | | Sbjct 349018 GCAAGCTGAGCGACCTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAGTGAACAAA- 348962 Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT- 297731 ||||| ||||| ||| || || |||||||| | ||| |||||||| || || || Sbjct 348961 -ACTTTACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATC 348903 Query 297732 CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768 | | || ||||||||| | || ||||||||||| Sbjct 348902 CATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 348867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102844079887700