Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq432 107 2e-18 seq964 100 3e-16 seq1879 98.7 1e-15 seq413 95.1 1e-14 >seq432 Length=117168 Score = 107 bits (118), Expect = 2e-18 Identities = 85/100 (85%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 56983 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGT 57042 |||| || ||||| ||||| || |||| |||| | |||||||||| |||| ||||||| Sbjct 73413 AAATGAA-GTTTA--AAAAAATTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGT 73357 Query 57043 GACAGGCGGACATACTCACCACTATACTACCGAGGATTGA 57082 ||||||||| ||||||||||||||||||||||||| ||| Sbjct 73356 GACAGGCGGGAATACTCACCACTATACTACCGAGGACTGA 73317 >seq964 Length=1190084 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||||| Sbjct 910610 AAAAAGTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 910551 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 910550 CACCACTATACTACCGAGGA 910531 >seq1879 Length=307288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 || |||||| |||| | |||||||||| |||| |||||||||||||||| |||||||| Sbjct 143725 ATATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCAC 143666 Query 57062 CACTATACTACCGAGGA 57078 ||||||||||||||||| Sbjct 143665 CACTATACTACCGAGGA 143649 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 144398 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 144339 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 144338 TACTACCGAGGAT 144326 >seq413 Length=118473 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 49300 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49241 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 49240 TACTACCGAGGA 49229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543195539413280