Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq432 107 2e-18
seq964 100 3e-16
seq1879 98.7 1e-15
seq413 95.1 1e-14
>seq432
Length=117168
Score = 107 bits (118), Expect = 2e-18
Identities = 85/100 (85%), Gaps = 3/100 (3%)
Strand=Plus/Minus
Query 56983 AAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGT 57042
|||| || ||||| ||||| || |||| |||| | |||||||||| |||| |||||||
Sbjct 73413 AAATGAA-GTTTA--AAAAAATTCCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGT 73357
Query 57043 GACAGGCGGACATACTCACCACTATACTACCGAGGATTGA 57082
||||||||| ||||||||||||||||||||||||| |||
Sbjct 73356 GACAGGCGGGAATACTCACCACTATACTACCGAGGACTGA 73317
>seq964
Length=1190084
Score = 100 bits (110), Expect = 3e-16
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058
|||| |||||| |||| | |||||||||| |||| |||||||||||||||| |||||
Sbjct 910610 AAAAAGTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACT 910551
Query 57059 CACCACTATACTACCGAGGA 57078
||||||||||||||||||||
Sbjct 910550 CACCACTATACTACCGAGGA 910531
>seq1879
Length=307288
Score = 98.7 bits (108), Expect = 1e-15
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|| |||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||
Sbjct 143725 ATATTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCAC 143666
Query 57062 CACTATACTACCGAGGA 57078
|||||||||||||||||
Sbjct 143665 CACTATACTACCGAGGA 143649
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 144398 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 144339
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 144338 TACTACCGAGGAT 144326
>seq413
Length=118473
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 49300 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 49241
Query 57067 TACTACCGAGGA 57078
||||||||||||
Sbjct 49240 TACTACCGAGGA 49229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543195539413280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |