Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq147 111 2e-19 seq684 102 8e-17 >seq147 Length=144011 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223 ||| ||||||| |||| || | |||||| |||||| | ||||| || || |||||| Sbjct 32177 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 32118 Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283 ||||| ||||| | || |||| ||| || || | | |||| | ||| || || Sbjct 32117 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 32058 Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343 | |||||||||| ||||| ||| ||||||||| ||||| || | |||||| |||| Sbjct 32057 AACTGTTTTGCCAAATCGCAGCTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 31998 Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403 | || || |||| | | |||| || ||| |||| ||| || | | |||||| Sbjct 31997 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATGAAAGCA 31938 Query 154404 TCGGCGAGCCCTTG 154417 || || | |||||| Sbjct 31937 TCCGCCAACCCTTG 31924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873 |||||| | |||||||||||| | ||| |||| ||| || ||||| | || Sbjct 31325 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGG 31266 Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933 ||||||| |||||| | ||| || | ||| ||||| || | ||| || | ||| Sbjct 31265 GCACATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 31206 Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993 | ||||| |||||||| | || | || ||||| ||| || ||| ||| | Sbjct 31205 AAGGGCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTG-TTCTTTTTCGCGT 31147 Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047 ||| ||||||| ||||||| |||||||| || || ||||| || || | ||| || Sbjct 31146 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCC 31092 >seq684 Length=410242 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 |||||||| || || |||||||||||||| ||||||||||| |||||| || | | Sbjct 366486 CGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACATTTTCAATT 366545 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 ||||| | |||||||| | ||| | ||||||||| || | ||| || ||||||||| Sbjct 366546 GTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTAACGAAAATT 366605 Query 64439 TGCATT 64444 |||||| Sbjct 366606 TGCATT 366611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| | || || |||||||| ||||| |||||||||||||| || || ||||| Sbjct 368006 CTTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTT 368065 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| || | ||| || ||| |||||||| | ||| | ||| || || || Sbjct 368066 ACCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGT 368125 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446 | |||||| || || || |||||||| Sbjct 368126 GAGAGTTTTCACAAATATCTGCATTTT 368152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 |||||||| || || |||||||||||||| ||||||||||| |||||| || | | Sbjct 366199 CGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACATTTTCTATT 366258 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| | |||||||| | || | ||| || || || | ||||| ||||||||| Sbjct 366259 GTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGCGTTTTAACGAAAATT 366318 Query 64439 TGCAT 64443 ||||| Sbjct 366319 TGCAT 366323 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 64297 CTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356 || ||| || ||| |||| | || ||||| || || |||||||||||||| ||||| || Sbjct 337740 CTACTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT 337799 Query 64357 TTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCC 64416 ||| || ||| ||| | ||| ||| | |||||||| | ||| | ||| || || Sbjct 337800 TTTACCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCC 337859 Query 64417 GGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||||| |||||||||||||| Sbjct 337860 AGTAAGCGTTTTAACGAAAATTTGCAT 337886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 || ||||| || || |||||||||||||| ||||||||||| |||||| ||| | | Sbjct 367056 CGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACATTCTCTATT 367115 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || || | |||||||| | ||| | ||| ||||| || | || || ||||||||| Sbjct 367116 GTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAAATT 367175 Query 64439 TGCATT 64444 |||||| Sbjct 367176 TGCATT 367181 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| | || | || ||||| || || |||||||||||||| ||||||||| Sbjct 338589 TGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATT 338648 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || |||||| || | ||| || | |||||||| | ||| | ||| ||||| Sbjct 338649 TTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCA 338708 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || || ||||| ||||||||| Sbjct 338709 GTGAGGGTCTTAACGAATATTTGCATT 338735 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 || ||||| || || |||||||||||||| ||||||||||| |||||| || | | Sbjct 366771 CGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACATTTTCTATT 366830 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| | |||||||| | || | ||| || || || | ||||| ||||||||| Sbjct 366831 GTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGCGTTTTAACGAAAATT 366890 Query 64439 TGCAT 64443 ||||| Sbjct 366891 TGCAT 366895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| |||| | |||||||| || || |||||||| ||||| || |||||||| Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || | ||| || | |||||||| | ||| | ||| ||||| || | Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499628923786480