Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq147 111 2e-19
seq684 102 8e-17
>seq147
Length=144011
Score = 111 bits (122), Expect = 2e-19
Identities = 177/254 (70%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223
||| ||||||| |||| || | |||||| |||||| | ||||| || || ||||||
Sbjct 32177 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 32118
Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283
||||| ||||| | || |||| ||| || || | | |||| | ||| || ||
Sbjct 32117 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 32058
Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343
| |||||||||| ||||| ||| ||||||||| ||||| || | |||||| ||||
Sbjct 32057 AACTGTTTTGCCAAATCGCAGCTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 31998
Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403
| || || |||| | | |||| || ||| |||| ||| || | | ||||||
Sbjct 31997 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATGAAAGCA 31938
Query 154404 TCGGCGAGCCCTTG 154417
|| || | ||||||
Sbjct 31937 TCCGCCAACCCTTG 31924
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873
|||||| | |||||||||||| | ||| |||| ||| || ||||| | ||
Sbjct 31325 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGG 31266
Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933
||||||| |||||| | ||| || | ||| ||||| || | ||| || | |||
Sbjct 31265 GCACATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 31206
Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993
| ||||| |||||||| | || | || ||||| ||| || ||| ||| |
Sbjct 31205 AAGGGCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTG-TTCTTTTTCGCGT 31147
Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047
||| ||||||| ||||||| |||||||| || || ||||| || || | ||| ||
Sbjct 31146 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGCAAACGCCCC 31092
>seq684
Length=410242
Score = 102 bits (112), Expect = 8e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
|||||||| || || |||||||||||||| ||||||||||| |||||| || | |
Sbjct 366486 CGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACATTTTCAATT 366545
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
||||| | |||||||| | ||| | ||||||||| || | ||| || |||||||||
Sbjct 366546 GTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTAACGAAAATT 366605
Query 64439 TGCATT 64444
||||||
Sbjct 366606 TGCATT 366611
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| | || || |||||||| ||||| |||||||||||||| || || |||||
Sbjct 368006 CTTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTT 368065
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
||| ||| || | ||| || ||| |||||||| | ||| | ||| || || ||
Sbjct 368066 ACCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGT 368125
Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446
| |||||| || || || ||||||||
Sbjct 368126 GAGAGTTTTCACAAATATCTGCATTTT 368152
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
|||||||| || || |||||||||||||| ||||||||||| |||||| || | |
Sbjct 366199 CGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACATTTTCTATT 366258
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
|||||| | |||||||| | || | ||| || || || | ||||| |||||||||
Sbjct 366259 GTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGCGTTTTAACGAAAATT 366318
Query 64439 TGCAT 64443
|||||
Sbjct 366319 TGCAT 366323
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 64297 CTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356
|| ||| || ||| |||| | || ||||| || || |||||||||||||| ||||| ||
Sbjct 337740 CTACTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT 337799
Query 64357 TTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCC 64416
||| || ||| ||| | ||| ||| | |||||||| | ||| | ||| || ||
Sbjct 337800 TTTACCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCC 337859
Query 64417 GGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||||| ||||||||||||||
Sbjct 337860 AGTAAGCGTTTTAACGAAAATTTGCAT 337886
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
|| ||||| || || |||||||||||||| ||||||||||| |||||| ||| | |
Sbjct 367056 CGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACATTCTCTATT 367115
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
|| || | |||||||| | ||| | ||| ||||| || | || || |||||||||
Sbjct 367116 GTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAACGAAAATT 367175
Query 64439 TGCATT 64444
||||||
Sbjct 367176 TGCATT 367181
Score = 86.0 bits (94), Expect = 6e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357
||||| || ||| | || | || ||||| || || |||||||||||||| |||||||||
Sbjct 338589 TGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATT 338648
Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417
|| |||||| || | ||| || | |||||||| | ||| | ||| |||||
Sbjct 338649 TTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCA 338708
Query 64418 GTCAAAGTTTTTACGAAAATTTGCATT 64444
|| | || || ||||| |||||||||
Sbjct 338709 GTGAGGGTCTTAACGAATATTTGCATT 338735
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
|| ||||| || || |||||||||||||| ||||||||||| |||||| || | |
Sbjct 366771 CGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACATTTTCTATT 366830
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
|||||| | |||||||| | || | ||| || || || | ||||| |||||||||
Sbjct 366831 GTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGCGTTTTAACGAAAATT 366890
Query 64439 TGCAT 64443
|||||
Sbjct 366891 TGCAT 366895
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|||||| |||| | |||||||| || || |||||||| ||||| || ||||||||
Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|| ||| || | ||| || | |||||||| | ||| | ||| ||||| || |
Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || |||||||||||||||
Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499628923786480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |