Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1852 105 6e-18
seq833 105 6e-18
seq684 102 7e-17
>seq1852
Length=8990
Score = 105 bits (116), Expect = 6e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || ||||||||||||||||||||||||||||| ||| |
Sbjct 6514 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTACCTTTCACAT 6455
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 6454 TTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 6395
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 6394 CAAAAATCTGCATACCGCCAC 6374
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || |||||||||||||| |||||||||||||| || |
Sbjct 6227 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACCCTTCACAT 6168
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 6167 TTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 6108
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 6107 CAAAAATCTGCATACCGCCAC 6087
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| ||||| | || |||| |||||| || || ||||||||||| ||||| ||||||||
Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||||| ||| | |||||| || | || ||||| || || | ||||| || ||
Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
||||| || || || || |||||
Sbjct 5685 AGAGTCTTCACGAATATCTGCAT 5663
>seq833
Length=82521
Score = 105 bits (116), Expect = 6e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || ||||||||||||||||||||||||||||| ||| |
Sbjct 80664 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTACCTTTCACAT 80605
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 80604 TTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 80545
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 80544 CAAAAATCTGCATACCGCCAC 80524
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || |||||||||||||| |||||||||||||| || |
Sbjct 80377 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACCCTTCACAT 80318
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 80317 TTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 80258
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 80257 CAAAAATCTGCATACCGCCAC 80237
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| ||||| | || |||| |||||| || || ||||||||||| ||||| ||||||||
Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
||||| ||| | |||||| || | || ||||| || || | ||||| || ||
Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
||||| || || || || |||||
Sbjct 79835 AGAGTCTTCACGAATATCTGCAT 79813
>seq684
Length=410242
Score = 102 bits (112), Expect = 7e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
||||| || || || ||||||| |||||||| || || ||||| ||||||||||||||
Sbjct 338586 AATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGT 338645
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| ||| | ||||| |||||||| | || ||||| | ||| | ||||||
Sbjct 338646 ATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 338705
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || || || || ||||||||
Sbjct 338706 CCAGTGAGGGTCTTAACGAATATTTGCAT 338734
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| |||||||| || || ||||| || ||||||||||||||||| ||| |
Sbjct 336901 ATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACAT 336960
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
|||| |||||||| | || ||||| | ||| | |||||||| || || || || |
Sbjct 336961 TCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 337020
Query 45328 CAAAAATTTGCAT 45340
| |||||||||||
Sbjct 337021 CGAAAATTTGCAT 337033
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| |||||||| || || ||||| |||||||||||||| ||||| ||| |
Sbjct 367048 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 367107
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
|||| |||||||| | || ||||| | ||| | |||||||| || || || || |
Sbjct 367108 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 367167
Query 45328 CAAAAATTTGCAT 45340
| |||||||||||
Sbjct 367168 CGAAAATTTGCAT 367180
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| |||||||| || || ||||| |||||||||||||||||||| ||| |
Sbjct 337756 ATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCTTTCACATTC 337815
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| ||||| || | || ||||| | ||| | ||||| || || || ||||| ||
Sbjct 337816 TCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTTTAACG 337875
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 337876 AAAATTTGCAT 337886
Score = 91.5 bits (100), Expect = 1e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| |||||||| || || ||||| ||||| |||||||| ||||| ||| |
Sbjct 337471 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTATTTTGCCTTTTACAT 337530
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
|||| |||||||| | || ||||| | ||| | |||||||| || || || || |
Sbjct 337531 TCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 337590
Query 45328 CAAAAATTTGCAT 45340
| |||||||||||
Sbjct 337591 CGAAAATTTGCAT 337603
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| || ||||| || || ||||| |||||||||||||| ||||| ||| |
Sbjct 366478 ATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 366537
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || ||||| | || ||||| | ||| | || ||||| || ||||| || |
Sbjct 366538 TTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTAA 366597
Query 45328 CAAAAATTTGCAT 45340
| |||||||||||
Sbjct 366598 CGAAAATTTGCAT 366610
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| |||||||| || || ||||| |||||||||||||| ||||| ||| |
Sbjct 366763 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 366822
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||||| || || || | || ||||| | || | ||||| || || || ||||| |
Sbjct 366823 TTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGCGTTTTAA 366882
Query 45328 CAAAAATTTGCAT 45340
| |||||||||||
Sbjct 366883 CGAAAATTTGCAT 366895
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||| || ||||| || || ||||| ||||||||||| |||||||| || |
Sbjct 368017 ATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTACCCTTCACAT 368076
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | ||||| || | || ||||| ||||||| ||||| || || |||||||| |
Sbjct 368077 TTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGAGTTTTCA 368136
Query 45328 CAAAAATTTGCAT 45340
|||| || |||||
Sbjct 368137 CAAATATCTGCAT 368149
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| || ||||| || || ||||| || |||||||| || ||||| ||| | |
Sbjct 337185 ATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTCACATTT 337244
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| |||||||| | || ||||| | ||| | |||||||| || || || || ||
Sbjct 337245 TCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAACG 337304
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 337305 AAAATTTGCAT 337315
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| || ||||| || || ||||| |||||||||||||| ||||| ||| |
Sbjct 366191 ATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 366250
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||||| || || || | || ||||| | || | ||||| || || || ||||| |
Sbjct 366251 TTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGCGTTTTAA 366310
Query 45328 CAAAAATTTGCAT 45340
| |||||||||||
Sbjct 366311 CGAAAATTTGCAT 366323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451988837598320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |