Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1852 105 6e-18 seq833 105 6e-18 seq684 102 7e-17 >seq1852 Length=8990 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || ||||||||||||||||||||||||||||| ||| | Sbjct 6514 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTACCTTTCACAT 6455 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 6454 TTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 6395 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 6394 CAAAAATCTGCATACCGCCAC 6374 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || |||||||||||||| |||||||||||||| || | Sbjct 6227 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACCCTTCACAT 6168 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 6167 TTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 6108 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 6107 CAAAAATCTGCATACCGCCAC 6087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || |||| |||||| || || ||||||||||| ||||| |||||||| Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | |||||| || | || ||||| || || | ||||| || || Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || ||||| Sbjct 5685 AGAGTCTTCACGAATATCTGCAT 5663 >seq833 Length=82521 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || ||||||||||||||||||||||||||||| ||| | Sbjct 80664 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTACCTTTCACAT 80605 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 80604 TTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 80545 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 80544 CAAAAATCTGCATACCGCCAC 80524 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || |||||||||||||| |||||||||||||| || | Sbjct 80377 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACCCTTCACAT 80318 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 80317 TTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 80258 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 80257 CAAAAATCTGCATACCGCCAC 80237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || |||| |||||| || || ||||||||||| ||||| |||||||| Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | |||||| || | || ||||| || || | ||||| || || Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || ||||| Sbjct 79835 AGAGTCTTCACGAATATCTGCAT 79813 >seq684 Length=410242 Score = 102 bits (112), Expect = 7e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || || ||||||| |||||||| || || ||||| |||||||||||||| Sbjct 338586 AATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGT 338645 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | ||||| |||||||| | || ||||| | ||| | |||||| Sbjct 338646 ATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 338705 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || |||||||| Sbjct 338706 CCAGTGAGGGTCTTAACGAATATTTGCAT 338734 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 336901 ATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTTACAT 336960 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| |||||||| | || ||||| | ||| | |||||||| || || || || | Sbjct 336961 TCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 337020 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 337021 CGAAAATTTGCAT 337033 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| |||||||||||||| ||||| ||| | Sbjct 367048 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 367107 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| |||||||| | || ||||| | ||| | |||||||| || || || || | Sbjct 367108 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 367167 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 367168 CGAAAATTTGCAT 367180 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 337756 ATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCTTTCACATTC 337815 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| ||||| || | || ||||| | ||| | ||||| || || || ||||| || Sbjct 337816 TCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGCGTTTTAACG 337875 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 337876 AAAATTTGCAT 337886 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| ||||| |||||||| ||||| ||| | Sbjct 337471 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTATTTTGCCTTTTACAT 337530 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| |||||||| | || ||||| | ||| | |||||||| || || || || | Sbjct 337531 TCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAA 337590 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 337591 CGAAAATTTGCAT 337603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| || ||||| || || ||||| |||||||||||||| ||||| ||| | Sbjct 366478 ATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 366537 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || ||||| | || ||||| | ||| | || ||||| || ||||| || | Sbjct 366538 TTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAAGAGTCTTAA 366597 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 366598 CGAAAATTTGCAT 366610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| |||||||||||||| ||||| ||| | Sbjct 366763 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 366822 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||||| || || || | || ||||| | || | ||||| || || || ||||| | Sbjct 366823 TTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGCGTTTTAA 366882 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 366883 CGAAAATTTGCAT 366895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||| || ||||| || || ||||| ||||||||||| |||||||| || | Sbjct 368017 ATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTACCCTTCACAT 368076 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | ||||| || | || ||||| ||||||| ||||| || || |||||||| | Sbjct 368077 TTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGAGTTTTCA 368136 Query 45328 CAAAAATTTGCAT 45340 |||| || ||||| Sbjct 368137 CAAATATCTGCAT 368149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| || ||||| || || ||||| || |||||||| || ||||| ||| | | Sbjct 337185 ATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTCACATTT 337244 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| |||||||| | || ||||| | ||| | |||||||| || || || || || Sbjct 337245 TCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGGGTCTTAACG 337304 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 337305 AAAATTTGCAT 337315 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| || ||||| || || ||||| |||||||||||||| ||||| ||| | Sbjct 366191 ATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCTTTTACAT 366250 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||||| || || || | || ||||| | || | ||||| || || || ||||| | Sbjct 366251 TTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAAGCGTTTTAA 366310 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 366311 CGAAAATTTGCAT 366323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451988837598320