Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq684 89.7 1e-12 >seq684 Length=410242 Score = 89.7 bits (98), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || || || ||||||||||| || || |||||||||| |||||||| || Sbjct 368006 CTTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTT 368065 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| ||| | ||||||| | ||| || |||| || || || || || || Sbjct 368066 ACCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGT 368125 Query 199606 GAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||||||||||||| || || |||||| Sbjct 368126 GAGAGTTTTCACAAATATCTG---CATTTT 368152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178883203260314