Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2463 154 1e-32 seq684 84.2 2e-11 >seq2463 Length=168562 Score = 154 bits (170), Expect = 1e-32 Identities = 261/373 (70%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973 || ||||||| | || || | ||||||||||| ||||| |||||||| ||||| || | Sbjct 100107 AGACCTCGTCACGAGAGATCAACTCGTTGCTGAAGGTCAAACCGGGCATCAGGCCTCGCT 100048 Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033 |||| | ||| || || | ||||| ||||| |||||||| | || || || || |||| Sbjct 100047 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATACCTTCAACAGCTGCGA 99988 Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG---GCGATCCAGCGCAGCGCCC 133090 | || |||| || ||| ||| ||| | || || | ||||||| |||| |||| Sbjct 99987 ACGCAACCAAACGTTCG--GAAAATGG-TGATTGGCGGTCACCGATCCAACGCAAAGCCC 99931 Query 133091 ATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCT 133150 | || || |||| || || ||||| |||||||| || ||||| |||| | | | | Sbjct 99930 AATCTGCTTTTTTCTTCACACACGGAATCGTTTCAATTGCGTTGAACAGA--AAATCACG 99873 Query 133151 CTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTT 133208 || | ||| ||| | ||||||||| || | |||||||| || || || || Sbjct 99872 CTCCACCGGATCACGGATGTAGGTGTCAATCAACAAGCTGTACATTTCGGAATGGACATT 99813 Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 || || || ||||| ||||| || ||| | || || ||| ||| || | |||||||| Sbjct 99812 TTCTATAGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGA 99753 Query 133269 GAAACGCTCGACC 133281 || || || ||| Sbjct 99752 AAATCGTTCCACC 99740 >seq684 Length=410242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| ||||| || ||||| ||||| || |||||||| || | || || || || Sbjct 339709 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCC 339650 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | ||| | |||| ||||| | || |||||||||||||| |||| Sbjct 339649 TCAGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 339590 Query 38361 CAACAGCGGCTCATTT 38376 |||||||| ||||||| Sbjct 339589 CAACAGCGTCTCATTT 339574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500156907009280