Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2463 154 1e-32
seq684 84.2 2e-11
>seq2463
Length=168562
Score = 154 bits (170), Expect = 1e-32
Identities = 261/373 (70%), Gaps = 10/373 (3%)
Strand=Plus/Minus
Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973
|| ||||||| | || || | ||||||||||| ||||| |||||||| ||||| || |
Sbjct 100107 AGACCTCGTCACGAGAGATCAACTCGTTGCTGAAGGTCAAACCGGGCATCAGGCCTCGCT 100048
Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033
|||| | ||| || || | ||||| ||||| |||||||| | || || || || ||||
Sbjct 100047 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATACCTTCAACAGCTGCGA 99988
Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG---GCGATCCAGCGCAGCGCCC 133090
| || |||| || ||| ||| ||| | || || | ||||||| |||| ||||
Sbjct 99987 ACGCAACCAAACGTTCG--GAAAATGG-TGATTGGCGGTCACCGATCCAACGCAAAGCCC 99931
Query 133091 ATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCT 133150
| || || |||| || || ||||| |||||||| || ||||| |||| | | | |
Sbjct 99930 AATCTGCTTTTTTCTTCACACACGGAATCGTTTCAATTGCGTTGAACAGA--AAATCACG 99873
Query 133151 CTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTT 133208
|| | ||| ||| | ||||||||| || | |||||||| || || || ||
Sbjct 99872 CTCCACCGGATCACGGATGTAGGTGTCAATCAACAAGCTGTACATTTCGGAATGGACATT 99813
Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268
|| || || ||||| ||||| || ||| | || || ||| ||| || | ||||||||
Sbjct 99812 TTCTATAGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGA 99753
Query 133269 GAAACGCTCGACC 133281
|| || || |||
Sbjct 99752 AAATCGTTCCACC 99740
>seq684
Length=410242
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| ||||| || ||||| ||||| || |||||||| || | || || || ||
Sbjct 339709 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCC 339650
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| ||| | ||| | |||| ||||| | || |||||||||||||| ||||
Sbjct 339649 TCAGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 339590
Query 38361 CAACAGCGGCTCATTT 38376
|||||||| |||||||
Sbjct 339589 CAACAGCGTCTCATTT 339574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500156907009280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |