Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq265 336 2e-86 seq1033 145 6e-29 seq118 107 1e-17 >seq265 Length=128937 Score = 336 bits (372), Expect = 2e-86 Identities = 495/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Plus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 78373 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGA 78432 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 | | |||| ||||| || | | ||||| || |||||| || |||||||| | | Sbjct 78433 CCTCAAAAATGCCATCCTCGATGGTCAAAATAGACACATCAAACGTACCACCACCAAGGT 78492 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 78493 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 78552 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 | || |||||||| || ||||||| ||||||||| | ||||| ||| |||| || |||| Sbjct 78553 CCGCTGTTGGTTCGTTGATAATTCGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 78612 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || | || ||||||||||||||||| ||||||||||| ||||| || | | Sbjct 78613 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCGTCCTTAA 78672 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | ||| || | |||||| || |||| ||||| || ||| | ||| | | Sbjct 78673 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTGA 78732 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 ||| ||| || | | || ||| || || || ||| |||| || | ||||| Sbjct 78733 TTTCTTCCGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 78792 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 | ||| |||| ||||||||||||||||| | |||||| || || || ||| |||| Sbjct 78793 TTCCATCATTGATAACTTTAAATGGCCAATGTTTCATGTCAGACTGCACAGCAGCATCAT 78852 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 78853 CAAATCGACGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 78912 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 | |||| || || ||||| |||||||| |||| || || || || | |||||| || Sbjct 78913 CCTGATTCTTTGCCGCATCGCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 78972 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 78973 GCGTGGTACGATTCCCTTGATCGTTTGCAATAATTTCAACTTTACCATGCTGGAACACGC 79032 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | |||||||| | || || || |||||||| ||||||||| Sbjct 79033 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 79073 Score = 127 bits (140), Expect = 2e-23 Identities = 199/282 (71%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| | || ||||| || |||||||| |||||||| | ||| || |||| ||| ||| Sbjct 77903 ATACCTGCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCA 77962 Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 |||||||||| ||| || || || | || |||||||| |||| ||||| || || || Sbjct 77963 TTGAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 78021 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 ||||| |||||| | | || ||| |||| ||| | ||| | | ||||||| || || Sbjct 78022 TACAACTTCATGAATCACTGCTTTGTCCAATTTCGCATCACGAAGAGCTTTTTCTACTGG 78081 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 ||| | | | | |||||||| | | |||||||| || ||||| |||| ||| Sbjct 78082 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATAGT 78141 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | ||||||| |||||| | | | ||||| ||| || Sbjct 78142 GGTGTAGAAATCAATGCCTTCGTAGAGACTATCAATTTCTAT 78183 >seq1033 Length=69817 Score = 145 bits (160), Expect = 6e-29 Identities = 345/513 (67%), Gaps = 20/513 (4%) Strand=Plus/Plus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| ||||| |||| | ||||||||||||||||| | || |||||||| || ||| Sbjct 52869 GGTTCGTTAATGATTCGAACTACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 52928 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||||| |||||| ||||| |||||||| || | ||||||| | |||||||| Sbjct 52929 TGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTTG 52988 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 52989 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 53048 Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 || | | ||| ||| |||| | | | | || || | ||||| | Sbjct 53049 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTGAGTTGAACGTTCGGTTTGCT--TG 53103 Query 518438 ACATTAATA--ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAA 518495 | || || ||| |||| ||||| ||| ||| | ||||| ||| | ||| Sbjct 53104 ATTTTTCTAACACTGTAAACGGCCACATTTTACGATCCGCTTGAAGACTCTTGTCCGACC 53163 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCT 518554 | |||| |||| | || || ||||| || | ||||| ||||| | | || | Sbjct 53164 ATTCTCGTCCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC- 53222 Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGAT 518611 |||| ||| || | ||| || |||||| | | || | |||||| | ||||| || Sbjct 53223 TGATTTTTCGCGGAATCGCCGATCAGACGCTCACCTTCCGGTGTAAAAGCCACATACGAC 53282 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671 || || | ||||| || |||||||| ||||||||||| || |||||| | | || Sbjct 53283 GGGGTAATACGATTGCCCTGATCATTGGCAATAATTTCTACACGACCATTCTTGAAAACT 53342 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 || || ||||||| || || ||| |||||| Sbjct 53343 CCAAC---ACTAAAAATTATT--TAATTCAATA 53370 >seq118 Length=147998 Score = 107 bits (118), Expect = 1e-17 Identities = 125/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | |||||||| Sbjct 17010 TATATTTGTGGTACAGATGAATATGGCACTGCCACAGAGACAAAAGCTATTGAGGAAGGT 17069 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 || ||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 17070 GTGACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 17129 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACAG 841494 |||||||| |||||||| ||||||| | | | |||||| ||||| Sbjct 17130 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAGAACAG 17174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780696257586652