Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq265 250 3e-61 seq1033 147 3e-30 >seq265 Length=128937 Score = 250 bits (276), Expect = 3e-61 Identities = 514/756 (68%), Gaps = 14/756 (2%) Strand=Plus/Plus Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 ||||| || || || || ||||| || || || || ||||| | || || || ||| Sbjct 78267 AACGTGCGTTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 78326 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || || ||||| | || || |||||||| | ||| || | | | Sbjct 78327 GACATGTCCTTCTTGTTCTTTCGCTTAAACTCAGCCACGAAATGATTTACCATGCGATTG 78386 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| | ||||| ||||| || || Sbjct 78387 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 78446 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575 | || ||| | || | || |||||||||||||||||||| |||||||| || || || Sbjct 78447 TCCTCGATGGTCAAAATAGACACATCAAACGTACCACCACCAAGGTCAAATATCAGAACA 78506 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||||| || || | || |||| || || || || || || ||||| |||||||| Sbjct 78507 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 78565 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || ||||| || || ||| |||| |||| ||| ||| | || ||||| ||||| || | Sbjct 78566 GTTGATAATTCGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 78624 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || ||||||||||| || ||||| || || | || |||||| | || | || || | Sbjct 78625 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCGTCCTTAACAGTTTTTCCCA 78684 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT--CGATGAAATCTCTTCAGC 7812 ||| | ||| || | || ||||| || | ||||| || || || ||||| | Sbjct 78685 AATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTG--ATTTCTTCCGG 78742 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | ||| |||| || || || | || |||| ||| | ||||| || || | Sbjct 78743 TGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGTTCCATC 78799 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 |||||| ||| | | ||||| |||||| || || || || ||| Sbjct 78800 ATTGATAACTTTAAATGGCCAATGTTTCATGTCAGACTGCACAGCAGCATCATCAAATCG 78859 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | |||||||| ||||| |||||||||||||| || | || |||| || || || Sbjct 78860 ACGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACCTGATT 78919 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| ||||| || || || || ||||| || || || || || || || ||| || Sbjct 78920 CTTTGCCGCATCGCCAATCAGTCGTTCGGTA---TCGGTGAAAGCAACATAACTTGGCGT 78976 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || ||||||||||| ||||| ||||||||||| || Sbjct 78977 GGTACGATTCCCTTGATCGTTTGCAATAATTTCAAC 79012 Score = 131 bits (144), Expect = 2e-25 Identities = 197/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || ||||| || || || || || || |||| || |||||||| || || ||| Sbjct 77909 GCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCATTGAAA 77968 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| |||| | |||| ||| || || || || |||||||| ||||| || | | Sbjct 77969 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGATCCACCCACCAATACAACT 78028 Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 |||| ||||| | ||| || | || | || ||||| | |||||| || |||||| Sbjct 78029 TCATGAATCACT---GCTTTGTCCAATTTCGCATCACGAAGAGCTTTTTCTACTGGTTCC 78085 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | |||||||||||| | |||||| ||||| || || || ||||| | || Sbjct 78086 AAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATAGTGGTG 78145 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 |||||||||| ||| ||||| | ||||||||| ||| Sbjct 78146 TAGAAATCAATGCCTTCGTAGAGACTATCAATTTCTATG 78184 >seq1033 Length=69817 Score = 147 bits (162), Expect = 3e-30 Identities = 320/468 (68%), Gaps = 17/468 (4%) Strand=Plus/Plus Query 7631 GGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 ||||| ||||| || |||| ||| || || |||||||| || |||||||||| || || Sbjct 52869 GGTTCGTTAATGATTCGAACTACA-TTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGC 52927 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 ||| ||||| | |||||| || || || || ||||| ||||| || | | |||| || Sbjct 52928 TTGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTT 52987 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | ||| | ||| || || ||||||||||| | |||||||| |||||| ||||| Sbjct 52988 GCCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTC 53047 Query 7810 AGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC 7869 | | ||| |||| |||||||||||| | | || || | ||||| || Sbjct 53048 GGGAGTGAACAATTTCTTTTCACCGTTAACAGTGAGTTGAACGTTCGGTTT----GCTTG 53103 Query 7870 ACCGGGGATAAC-CT-TATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGA 7926 | |||| || || ||| ||| ||| ||| |||| | || || |||||| Sbjct 53104 A-TTTTTCTAACACTGTAAACGGCCACATTTTACGATCCGCTTGAAGACTCTT-GTCCGA 53161 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 | | || ||| | | |||||| ||||| || || || || | || || ||| Sbjct 53162 CCATTCTCGTCCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAA 53221 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC---GTAAACGCGACGTA 8043 || || ||||| | || ||||| ||||| || | |||| ||||| || || || Sbjct 53222 CTGATTTTTCGCGGAATCGCCGATCAGACGCTC---ACCTTCCGGTGTAAAAGCCACATA 53278 Query 8044 CGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||| ||||| | ||||| || || || || |||||||||||||| || Sbjct 53279 CGACGGGGTAATACGATTGCCCTGATCATTGGCAATAATTTCTACACG 53326 Score = 105 bits (116), Expect = 8e-18 Identities = 414/642 (64%), Gaps = 12/642 (2%) Strand=Plus/Plus Query 6529 TTCGAGACCATTCTTCGCCTCGAC-CTTTTTCGCGTACTTTTCATCTTCATCTTTATACT 6587 |||||| |||| ||||| || || | || | | |||| | || || ||| ||| | Sbjct 51570 TTCGAGTTCATTTTTCGCATCCACACGTTCTTTCA-ACTTCTTGTCCTCTTCTGCATATT 51628 Query 6588 TTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCG 6647 | || ||||| | || ||| ||||| ||||| || | | | |||||| | Sbjct 51629 TCTCGGCATCGTTGATCATGCGGTCAATATCTTCCGGTGACAGACGGTTGTGATCATTGG 51688 Query 6648 TAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATA 6706 |||| || ||||| ||| ||| || | | | || ||||| || | || | ||||||| Sbjct 51689 TAATTGTGATCTTGTTCTTGTTT-CCGGTGCCTTTGTCTTCGGCGGTGACGTGCAAAATA 51747 Query 6707 CCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGA 6766 ||||| |||||| |||||| | || | ||||||||| ||| | || || | || Sbjct 51748 CCATTCACATCAATATCGAATGTGACTTCAATTTGTGGCACACCGCGAGGAGCCGGAGGT 51807 Query 6767 ATACCCGTTAAATCAAATGTACCAAGTAAACTG-TTATCCGTCGCCTTCTTACGTTCACC 6825 || || || | ||| || | ||||| || || || || | | | | ||||| || Sbjct 51808 ATGCCAGTAAGATCGAACTTGCCAAG-AAGGTGATTGTCTTTTGTCATTGGTCGTTCGCC 51866 Query 6826 TTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTC 6885 ||| | |||| ||| || |||| || ||||| || || || ||| || || Sbjct 51867 TTCGAAAACTTGAATAGTAACCGTGGGCTGATTGTCGGCAGCGGTGCTGAATATCTGCGA 51926 Query 6886 TTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGT 6945 |||||| | || | |||||| || ||||| | ||||| | || || | ||| Sbjct 51927 TTTCTTGGTCGGCACTACCGTATTCCTGGGAATCAGTTTCGTCATCACTCCGCCGACAGT 51986 Query 6946 TTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTT 7005 ||| | ||| | || || || | || ||||| || | || || | ||| || | Sbjct 51987 TTCAATTCCCAAAGTCAACGGATTGACATCCAACAGCACAAGATC---ACCAGTATCTT- 52042 Query 7006 CCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGG 7065 ||||||| | | | | | ||||| |||| || ||||| || || || || || || Sbjct 52043 --CTTCACCAGAAATTACGCCAGCTTGTACCGCAGCACCGTAGGCAACAGCTTCGTCAGG 52100 Query 7066 GTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTT 7125 ||||| | | | ||||| ||||| ||| | ||| | || |||||| | ||| Sbjct 52101 ATTAATACCACGACTGGGCTCTTTTCCGTTGAAAAATTCCTTCAGCAATTGTTGCACTTT 52160 Query 7126 CGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 || || || || |||||||||| || | ||||| ||| Sbjct 52161 GGGAATGCGAGTGCTACCACCGACCAGTACAACTTCATGCAC 52202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635112618655280