Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2288 127 2e-24 >seq2288 Length=193380 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 154867 CATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGA 154926 |||| || ||||| || || ||||| ||| ||| || |||||| ||||| | | Sbjct 124073 CATGCATGATGATAACTTATCCATCAACATTTGGAGTTTTTGAAGAACGCATTAAAGATG 124132 Query 154927 TATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATG 154986 | ||| | || || ||||| ||||||| ||| ||||| |||||||||| ||| | |||| Sbjct 124133 TTTGTCAAATTGTACATGAATATGGTGGACAGTTATATTTTGATGGAGCCAATATGAATG 124192 Query 154987 CACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTAC 155046 | || || ||||| || |||| |||||| |||||||| ||||| || || | Sbjct 124193 CTCAAGTGGGACTTTGTCGTCCTGGTGATTATGGTTTTGATGTATGCCATCTGAATTTGC 124252 Query 155047 ATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGG 155086 | ||||| || || || || ||||| || ||||||||||| Sbjct 124253 ACAAAACGTTTTGCATACCTCATGGGGGAGGAGGTCCTGG 124292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579194395513280