Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2288 125 8e-24 >seq2288 Length=193380 Score = 125 bits (138), Expect = 8e-24 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 159542 CATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGA 159601 |||| || ||||| || |||||||| ||| ||| || |||||| | ||| | | | Sbjct 124073 CATGCATGATGATAACTTATCCATCAACATTTGGAGTTTTTGAAGAACGCATTAAAGATG 124132 Query 159602 TATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATG 159661 | ||| | ||||| ||||| ||||||| ||| ||||| ||||||| || ||| | |||| Sbjct 124133 TTTGTCAAATTGTACATGAATATGGTGGACAGTTATATTTTGATGGAGCCAATATGAATG 124192 Query 159662 CACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTAC 159721 | || || || || || |||| |||||| |||||||| ||||| || || | Sbjct 124193 CTCAAGTGGGACTTTGTCGTCCTGGTGATTATGGTTTTGATGTATGCCATCTGAATTTGC 124252 Query 159722 ATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG--GTGT 159779 | || || || || || || ||||| || ||||||||||| | || || |||| |||| Sbjct 124253 ACAAAACGTTTTGCATACCTCATGGGGGAGGAGGTCCTGGAATGGGACCGATTGCAGTGT 124312 Query 159780 A 159780 | Sbjct 124313 A 124313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588032514673120