Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq2288 125 8e-24
>seq2288
Length=193380
Score = 125 bits (138), Expect = 8e-24
Identities = 173/241 (72%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 159542 CATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGA 159601
|||| || ||||| || |||||||| ||| ||| || |||||| | ||| | | |
Sbjct 124073 CATGCATGATGATAACTTATCCATCAACATTTGGAGTTTTTGAAGAACGCATTAAAGATG 124132
Query 159602 TATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATG 159661
| ||| | ||||| ||||| ||||||| ||| ||||| ||||||| || ||| | ||||
Sbjct 124133 TTTGTCAAATTGTACATGAATATGGTGGACAGTTATATTTTGATGGAGCCAATATGAATG 124192
Query 159662 CACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTAC 159721
| || || || || || |||| |||||| |||||||| ||||| || || |
Sbjct 124193 CTCAAGTGGGACTTTGTCGTCCTGGTGATTATGGTTTTGATGTATGCCATCTGAATTTGC 124252
Query 159722 ATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG--GTGT 159779
| || || || || || || ||||| || ||||||||||| | || || |||| ||||
Sbjct 124253 ACAAAACGTTTTGCATACCTCATGGGGGAGGAGGTCCTGGAATGGGACCGATTGCAGTGT 124312
Query 159780 A 159780
|
Sbjct 124313 A 124313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588032514673120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |