Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq684 116 8e-21 seq1852 96.9 8e-15 seq833 96.9 8e-15 >seq684 Length=410242 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || |||||||| ||||| |||||||| |||||||||||||||||||| || Sbjct 367667 TACCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 367726 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || ||||||||||| || || || || ||||| || |||| ||| |||||||||| Sbjct 367727 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 367786 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 367787 ACGTCTTCACAAATATCTGCAT 367808 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| || ||||| |||||||| |||||||||||||||||||| || Sbjct 339224 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 339283 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || ||||||||||| || || || || ||||| || |||| ||| |||||||||| Sbjct 339284 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 339343 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 339344 ACGTCTTCACAAATATCTGCAT 339365 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 || |||||| || || || | ||||| || ||||| ||||| |||||||| |||||||| Sbjct 337740 CTACTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT 337799 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| || || ||||| || ||||| || ||||||||| | || | || || || Sbjct 337800 TTTACCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCC 337859 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| ||||| | |||||| Sbjct 337860 AGTAAGCGTTTTAACGAAAATTTGCAT 337886 >seq1852 Length=8990 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| ||||| | || ||| || || |||||||||||||| || || |||||||| Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || || |||||||| || ||| ||||| || || | || ||||| || Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 5685 AGAGTCTTCACGAATATCTGCAT 5663 >seq833 Length=82521 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| ||||| | || ||| || || |||||||||||||| || || |||||||| Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || || |||||||| || ||| ||||| || || | || ||||| || Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 79835 AGAGTCTTCACGAATATCTGCAT 79813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109445464877714