Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq147 123 3e-23 seq2463 118 1e-21 >seq147 Length=144011 Score = 123 bits (136), Expect = 3e-23 Identities = 185/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545 || ||||||||| | ||| | || ||||||||| | |||||||||||||| || || Sbjct 32154 TTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 32095 Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605 ||| || || || | ||| || | || ||||| | |||| || | || || || Sbjct 32094 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGCT 32035 Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665 ||| || ||| |||||| || |||||||| ||||| | || | || ||||| Sbjct 32034 GCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTC 31975 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 | |||||||| ||||| || | ||| ||||| ||||| |||||||| Sbjct 31974 TTCGGATTCAAACGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCACACCAAT 31915 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752 ||||||||||| |||| ||||||||| Sbjct 31914 ACCAATTGGTCGATGACGTTTATTAGA 31888 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || ||||| ||||| || ||| || | || || |||||||||| ||| ||| Sbjct 31321 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCAC 31262 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| ||||||||| | ||| || | | |||| |||| ||| ||||||||||| Sbjct 31261 ATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGG 31202 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| || | ||| |||||| |||| | ||| |||| |||||| Sbjct 31201 GCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGA 31142 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || || | ||| || || ||||| ||||| ||||| Sbjct 31141 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 31107 >seq2463 Length=168562 Score = 118 bits (130), Expect = 1e-21 Identities = 249/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||| | | ||||| || || || || ||||| |||||||| |||| |||| Sbjct 100104 CCTCGTCACGAGAGATCAACTCGTTGCTGAAGGTCAAACCGGGCATCAGGCCTCGCTTTT 100045 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||||| || || || || || |||||||| |||||||| || ||||| || | Sbjct 100044 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATACCTTCAACAGCTGCGAACG 99985 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTA----TTATGAATCCATTTCAGTGCCCAA 19158 |||| | | ||| | | | | | ||| | | ||||| || |||||| Sbjct 99984 CAACCAAACGTTCGGAAAA--TGG--TGATTGGCGGTCACCGATCCAACGCAAAGCCCAA 99929 Query 19159 TCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCA 19218 || || || || || ||||| || || || || || | || || ||| | |||||| Sbjct 99928 TCTGCTTTTTTCTTCACACACGGAATCGTTTCAATTGCGTTGAACAGAAAATCACGCTCC 99869 Query 19219 TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCT 19278 | | ||| | || | || ||||| || ||||||||||| ||||| | ||||||| Sbjct 99868 ACCGGATCACGGATGTAGGTGTCAATCAACAAGCTGTACATTTCGGAATGGACATTTTCT 99809 Query 19279 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAAT 19338 ||||| || || || || || || | | |||||| || | || | ||| | ||||| Sbjct 99808 ATAGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGAAAAT 99749 Query 19339 CTTTCGACC 19347 | ||| ||| Sbjct 99748 CGTTCCACC 99740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090938992880