Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq147 123 3e-23
seq2463 118 1e-21
>seq147
Length=144011
Score = 123 bits (136), Expect = 3e-23
Identities = 185/267 (69%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545
|| ||||||||| | ||| | || ||||||||| | |||||||||||||| || ||
Sbjct 32154 TTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 32095
Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605
||| || || || | ||| || | || ||||| | |||| || | || || ||
Sbjct 32094 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGCT 32035
Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665
||| || ||| |||||| || |||||||| ||||| | || | || |||||
Sbjct 32034 GCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTC 31975
Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725
| |||||||| ||||| || | ||| ||||| ||||| ||||||||
Sbjct 31974 TTCGGATTCAAACGGATATCGCATCAAAATGAAAGCATCCGCCAACCCTTGCACACCAAT 31915
Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752
||||||||||| |||| |||||||||
Sbjct 31914 ACCAATTGGTCGATGACGTTTATTAGA 31888
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176
||||| || ||||| ||||| || ||| || | || || |||||||||| ||| |||
Sbjct 31321 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCAC 31262
Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236
|||| ||||||||| | ||| || | | |||| |||| ||| |||||||||||
Sbjct 31261 ATCAGTGACCAATCTCCGTCAGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGG 31202
Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296
|| ||| ||||| || | ||| |||||| |||| | ||| |||| ||||||
Sbjct 31201 GCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGA 31142
Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331
|| || | ||| || || ||||| ||||| |||||
Sbjct 31141 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 31107
>seq2463
Length=168562
Score = 118 bits (130), Expect = 1e-21
Identities = 249/369 (67%), Gaps = 8/369 (2%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
||||||| | | ||||| || || || || ||||| |||||||| |||| ||||
Sbjct 100104 CCTCGTCACGAGAGATCAACTCGTTGCTGAAGGTCAAACCGGGCATCAGGCCTCGCTTTT 100045
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| |||||||| || || || || || |||||||| |||||||| || ||||| || |
Sbjct 100044 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATACCTTCAACAGCTGCGAACG 99985
Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTA----TTATGAATCCATTTCAGTGCCCAA 19158
|||| | | ||| | | | | | ||| | | ||||| || ||||||
Sbjct 99984 CAACCAAACGTTCGGAAAA--TGG--TGATTGGCGGTCACCGATCCAACGCAAAGCCCAA 99929
Query 19159 TCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCA 19218
|| || || || || ||||| || || || || || | || || ||| | ||||||
Sbjct 99928 TCTGCTTTTTTCTTCACACACGGAATCGTTTCAATTGCGTTGAACAGAAAATCACGCTCC 99869
Query 19219 TCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCT 19278
| | ||| | || | || ||||| || ||||||||||| ||||| | |||||||
Sbjct 99868 ACCGGATCACGGATGTAGGTGTCAATCAACAAGCTGTACATTTCGGAATGGACATTTTCT 99809
Query 19279 ATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAAT 19338
||||| || || || || || || | | |||||| || | || | ||| | |||||
Sbjct 99808 ATAGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGAAAAT 99749
Query 19339 CTTTCGACC 19347
| ||| |||
Sbjct 99748 CGTTCCACC 99740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562090938992880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |