Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq684 143 2e-29 seq1852 132 4e-26 seq833 132 4e-26 >seq684 Length=410242 Score = 143 bits (158), Expect = 2e-29 Identities = 121/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| |||||||||||||| || ||||| || ||||| |||||||||||||| Sbjct 338586 AATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGT 338645 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||||| |||||| ||||| || | ||||||||| | ||||| |||||| Sbjct 338646 ATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 338705 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || ||||| ||||| Sbjct 338706 CCAGTGAGGGTCTTAACGAATATTTGCAT 338734 Score = 140 bits (154), Expect = 3e-28 Identities = 119/147 (81%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 || |||||||||||| || | ||||||||||||||| ||||| || |||||||| ||||| Sbjct 339560 TTACTTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAAT 339619 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 ||| ||||||| |||| | | ||| || | ||||||||| ||||| | ||||| || Sbjct 339620 TTTACCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCC 339679 Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||||| |||||||||||||| Sbjct 339680 AGTGAGAGTTTTCACAAATATCTGCAT 339706 Score = 140 bits (154), Expect = 3e-28 Identities = 119/147 (81%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 101323 TTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAAT 101382 || |||||| |||||||||| |||||| |||||||| ||||| ||||||||||| ||||| Sbjct 368003 TTACTTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAAT 368062 Query 101383 TTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCC 101442 ||| || ||| |||| | ||||| || | ||||||||| ||||| | ||||| || Sbjct 368063 TTTACCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCC 368122 Query 101443 GGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||||| |||||||||||||| Sbjct 368123 AGTGAGAGTTTTCACAAATATCTGCAT 368149 Score = 131 bits (144), Expect = 1e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||| | |||| ||||||||||||||||| ||||| || ||||| |||||||||||||| Sbjct 366175 AATTACATACCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGT 366234 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||||| |||||| || ||||| | ||||||||| | |||| ||||| Sbjct 366235 ATTTTGCCTTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTC 366294 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||||| || || || |||||| Sbjct 366295 CCAGTAAGCGTTTTAACGAAAATTTGCATG 366324 Score = 127 bits (140), Expect = 2e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||||||| || ||||| || ||||| |||||||||||||||||||| Sbjct 337743 CTTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTT 337802 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | |||| |||||||| | ||||||||| | ||||| ||||| || || Sbjct 337803 ACCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGT 337862 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || || |||||| Sbjct 337863 AAGCGTTTTAACGAAAATTTGCATG 337887 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| |||||||||||||| || ||||| || ||||| |||||||||||||| ||||| Sbjct 366754 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 366813 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| |||||| || ||||| | ||||||||| | |||| ||||| || || | Sbjct 366814 CTTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAA 366873 Query 101448 AAGTTTTTACAAATATCTGCATG 101470 ||||| || || || |||||| Sbjct 366874 GCGTTTTAACGAAAATTTGCATG 366896 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||||||||||||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 366469 TACCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 366528 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| |||| | || || || | ||||||||| | ||||| || ||||| || | Sbjct 366529 CTTTTACATTTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAA 366588 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || || || || ||||| Sbjct 366589 GAGTCTTAACGAAAATTTGCAT 366610 Score = 122 bits (134), Expect = 7e-23 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| |||||||||||||| || ||||| || ||||| |||||||||||||| ||||| Sbjct 367039 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 367098 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | |||| ||||| || | ||||||||| | ||||| |||||||| || | Sbjct 367099 CTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGA 367158 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || || || || ||||| Sbjct 367159 GGGTCTTAACGAAAATTTGCAT 367180 Score = 118 bits (130), Expect = 8e-22 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101322 ATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAA 101381 ||| | |||| |||||||||||||| || ||||| || ||||| || ||||||||||||| Sbjct 336886 ATTACATACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAA 336945 Query 101382 TTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGC 101441 |||| ||||||| | |||| ||||| || | ||| ||||| | ||||| ||||||| Sbjct 336946 TTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGC 337005 Query 101442 CGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || || || || || ||||| Sbjct 337006 CAGTGAGGGTCTTAACGAAAATTTGCAT 337033 Score = 118 bits (130), Expect = 8e-22 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||||||| |||||||| || ||||| || ||||||||||||||||| Sbjct 338027 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTT 338086 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| |||||||| | || ||||| | ||||||||| | |||| ||||| || || Sbjct 338087 ACCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGT 338146 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 338147 AAGCGTCTTAACGAAAATTTGCATG 338171 Score = 113 bits (124), Expect = 4e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||| | |||| ||||| ||||||||||| ||||| || ||||| || |||||||| || Sbjct 337166 CAATGACATACCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTG 337225 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||| ||| |||||| ||||| || | ||||||||| | ||||| ||||| Sbjct 337226 TATTTTGCCTTTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTT 337285 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || || || || ||||| Sbjct 337286 GCCAGTGAGGGTCTTAACGAAAATTTGCAT 337315 Score = 113 bits (124), Expect = 4e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 |||| | |||| |||||||||||||| || ||||| || ||||| ||||| |||||||| Sbjct 337454 CAATGACATACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTG 337513 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| ||||||| | |||| ||||| || | ||| ||||| | ||||| ||||| Sbjct 337514 TATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTT 337573 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || | || || || || || ||||| Sbjct 337574 GCCAGTGAGGGTCTTAACGAAAATTTGCAT 337603 Score = 113 bits (124), Expect = 4e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||| | |||| ||||||||||||||||| ||||| || ||||| || |||||||| || Sbjct 338303 AATTACATACCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGT 338362 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||||| | |||| || ||||| | ||| || || | ||||| ||||| Sbjct 338363 ATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTCGACCTCCAAAGTGATGGTTTTC 338422 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || || ||||| || |||||| Sbjct 338423 CCAGTAAGCGTCTTAACAAAAATTTGCATG 338452 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| || Sbjct 339224 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 339283 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 |||||| | || | || || |||| || ||||| || || | |||||| || || | Sbjct 339284 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 339343 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 339344 ACGTCTTCACAAATATCTGCAT 339365 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||||||||||| || || ||||||||||| |||||||| || Sbjct 367667 TACCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 367726 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 |||||| | || | || || |||| || ||||| || || | |||||| || || | Sbjct 367727 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 367786 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 367787 ACGTCTTCACAAATATCTGCAT 367808 >seq1852 Length=8990 Score = 132 bits (146), Expect = 4e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||||| Sbjct 6524 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 6465 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | || ||||| | || ||||| | |||| ||||| || ||| Sbjct 6464 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6405 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| |||||||| Sbjct 6404 AATGTTTTCACAAAAATCTGCAT 6382 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||||||||| || || ||||| |||||||||||||| |||||||||||||| Sbjct 6237 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 6178 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | || ||||| | || ||||| | |||| ||||| || ||| Sbjct 6177 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6118 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| |||||||| Sbjct 6117 AATGTTTTCACAAAAATCTGCAT 6095 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || || | || ||||| || ||||||||||| ||||| |||||||| Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | ||||| || | ||| ||||| || || | ||||| || || Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || ||||||||||| Sbjct 5685 AGAGTCTTCACGAATATCTGCAT 5663 >seq833 Length=82521 Score = 132 bits (146), Expect = 4e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||||| Sbjct 80674 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 80615 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | || ||||| | || ||||| | |||| ||||| || ||| Sbjct 80614 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80555 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| |||||||| Sbjct 80554 AATGTTTTCACAAAAATCTGCAT 80532 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||||||||| || || ||||| |||||||||||||| |||||||||||||| Sbjct 80387 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 80328 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | || ||||| | || ||||| | |||| ||||| || ||| Sbjct 80327 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80268 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| |||||||| Sbjct 80267 AATGTTTTCACAAAAATCTGCAT 80245 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || || | || ||||| || ||||||||||| ||||| |||||||| Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | ||||| || | ||| ||||| || || | ||||| || || Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || ||||||||||| Sbjct 79835 AGAGTCTTCACGAATATCTGCAT 79813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396266123047494