Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq684 91.5 1e-13
seq2042 84.2 2e-11
>seq684
Length=410242
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684
|||| ||||| || |||||||||||||| | || | ||| || ||||| ||||||
Sbjct 367667 TACCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 367726
Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744
|||||| | | | ||||||| ||| || || | |||||||||||||| ||||
Sbjct 367727 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 367786
Query 48745 AAGTTTTTACAAAAATCTGCATC 48767
| || || ||||| |||||||||
Sbjct 367787 ACGTCTTCACAAATATCTGCATC 367809
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684
|||| ||||| || || ||||||||||| | || | ||| || ||||| ||||||
Sbjct 339224 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 339283
Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744
|||||| | | | ||||||| ||| || || | |||||||||||||| ||||
Sbjct 339284 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 339343
Query 48745 AAGTTTTTACAAAAATCTGCATC 48767
| || || ||||| |||||||||
Sbjct 339344 ACGTCTTCACAAATATCTGCATC 339366
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|||||| ||||| || || ||||||||||| | |||| ||||| || || ||| ||
Sbjct 339563 CTTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 339622
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
||||||| | | || ||||| | ||||| |||| ||||| ||||| || ||
Sbjct 339623 ACCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 339682
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
| |||||| ||||| ||||||||
Sbjct 339683 GAGAGTTTTCACAAATATCTGCAT 339706
>seq2042
Length=751857
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134
|||| |||||||||| | ||||||||| | || || |||||| || ||| |||
Sbjct 275289 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGGAAATCTTGGTC 275230
Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194
| | |||||| | | ||||| || || ||||||||||| | || | ||| || ||
Sbjct 275229 GCCAAAATTGAATACAATTACTCCAACATTGCCCCTGTAATCTGCGTCTACCACGCCCGC 275170
Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254
|| | ||||||| ||||| | || | ||||| || || || || ||||| |||||
Sbjct 275169 GCCGATGTCGATGCCATGCTTCAAAGCCAAGCCAGATCGAGGTGCAATACGACCATAGCA 275110
Query 9255 TCCCACCGG 9263
|| || ||
Sbjct 275109 GCCGACAGG 275101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380925798315066
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |