Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq684 91.5 1e-13 seq2042 84.2 2e-11 >seq684 Length=410242 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| ||||| || |||||||||||||| | || | ||| || ||||| |||||| Sbjct 367667 TACCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 367726 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 |||||| | | | ||||||| ||| || || | |||||||||||||| |||| Sbjct 367727 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 367786 Query 48745 AAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 367787 ACGTCTTCACAAATATCTGCATC 367809 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| ||||| || || ||||||||||| | || | ||| || ||||| |||||| Sbjct 339224 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 339283 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 |||||| | | | ||||||| ||| || || | |||||||||||||| |||| Sbjct 339284 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 339343 Query 48745 AAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 339344 ACGTCTTCACAAATATCTGCATC 339366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 |||||| ||||| || || ||||||||||| | |||| ||||| || || ||| || Sbjct 339563 CTTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 339622 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||||||| | | || ||||| | ||||| |||| ||||| ||||| || || Sbjct 339623 ACCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 339682 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | |||||| ||||| |||||||| Sbjct 339683 GAGAGTTTTCACAAATATCTGCAT 339706 >seq2042 Length=751857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 |||| |||||||||| | ||||||||| | || || |||||| || ||| ||| Sbjct 275289 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGGAAATCTTGGTC 275230 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 | | |||||| | | ||||| || || ||||||||||| | || | ||| || || Sbjct 275229 GCCAAAATTGAATACAATTACTCCAACATTGCCCCTGTAATCTGCGTCTACCACGCCCGC 275170 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254 || | ||||||| ||||| | || | ||||| || || || || ||||| ||||| Sbjct 275169 GCCGATGTCGATGCCATGCTTCAAAGCCAAGCCAGATCGAGGTGCAATACGACCATAGCA 275110 Query 9255 TCCCACCGG 9263 || || || Sbjct 275109 GCCGACAGG 275101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925798315066