Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq2288 116 4e-21
>seq2288
Length=193380
Score = 116 bits (128), Expect = 4e-21
Identities = 171/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 138182 TACAC--CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTA 138239
||||| |||| || || | ||||||||||| || ||||| || || || || || ||
Sbjct 124313 TACACTGCAATCGGTCCCATTCCAGGACCTCCTCCCCCATGAGGTATGCAAAACGTTTTG 124254
Query 138240 TGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299
|| ||||| ||||| |||||||| |||||| |||| || || || || ||
Sbjct 124253 TGCAAATTCAGATGGCATACATCAAAACCATAATCACCAGGACGACAAAGTCCCACTTGA 124194
Query 138300 GCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACAT 138359
||||| | ||| || ||||| | ||||| ||| ||||||| ||||| || || | |||
Sbjct 124193 GCATTCATATTGGCTCCATCAAAATATAACTGTCCACCATATTCATGTACAATTTGACAA 124134
Query 138360 ATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACAT 138419
| | | | ||| | |||||| || ||| || |||||||| || ||||| || |||
Sbjct 124133 ACATCTTTAATGCGTTCTTCAAAAACTCCAAATGTTGATGGATAAGTTATCATCATGCAT 124074
Query 138420 G 138420
|
Sbjct 124073 G 124073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578980002325840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |