Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2288 116 4e-21 >seq2288 Length=193380 Score = 116 bits (128), Expect = 4e-21 Identities = 171/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 138182 TACAC--CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTA 138239 ||||| |||| || || | ||||||||||| || ||||| || || || || || || Sbjct 124313 TACACTGCAATCGGTCCCATTCCAGGACCTCCTCCCCCATGAGGTATGCAAAACGTTTTG 124254 Query 138240 TGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 || ||||| ||||| |||||||| |||||| |||| || || || || || Sbjct 124253 TGCAAATTCAGATGGCATACATCAAAACCATAATCACCAGGACGACAAAGTCCCACTTGA 124194 Query 138300 GCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACAT 138359 ||||| | ||| || ||||| | ||||| ||| ||||||| ||||| || || | ||| Sbjct 124193 GCATTCATATTGGCTCCATCAAAATATAACTGTCCACCATATTCATGTACAATTTGACAA 124134 Query 138360 ATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACAT 138419 | | | | ||| | |||||| || ||| || |||||||| || ||||| || ||| Sbjct 124133 ACATCTTTAATGCGTTCTTCAAAAACTCCAAATGTTGATGGATAAGTTATCATCATGCAT 124074 Query 138420 G 138420 | Sbjct 124073 G 124073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578980002325840