Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq265 315 9e-81 seq1852 134 2e-26 seq833 134 2e-26 seq684 131 2e-25 seq1033 129 8e-25 seq2180 100 4e-16 >seq265 Length=128937 Score = 315 bits (348), Expect = 9e-81 Identities = 556/807 (69%), Gaps = 5/807 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| || ||||| ||| |||||||| || | || ||| | Sbjct 79072 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 79013 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || || ||||| || ||||| || ||| || ||||| || || Sbjct 79012 GTTGAAATTATTGCAAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 78953 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| ||||| || |||| ||||| ||||| |||||| || |||| ||| ||| Sbjct 78952 GATACCGAACGACTGATTGGCGATGCGGCAAAGAATCAGGTTGCGTTGAATCCTCATAAT 78893 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| |||||||| ||||| ||||| ||| ||| || || Sbjct 78892 ACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATTTGATGATGCTGCTGTGCAGTCT 78833 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || || | ||| | | | ||||| | | || | || |||| ||| | Sbjct 78832 GACATGAAACATTGGCCATTTAAAGTTATCAATGATGGAACG---AAACCTAAAATTCAA 78776 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || |||| | || ||| ||| |||| | || |||||||| |||||||||| Sbjct 78775 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCGGAAGAAATCAGCGCTATGGTGTTA 78716 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | ||||||||||| ||||| ||| ||| |||| |||||||| || || || || | Sbjct 78715 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAATT 78656 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || || || | ||||| || || |||||||| || ||||||| | ||| Sbjct 78655 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 78596 Query 195779 GCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 | ||| | || ||| || |||||||||| ||||||||||||||||||||||||||||| Sbjct 78595 TCTGGTTTGAA-TGTTTTGCGAATTATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 78537 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 || || | || | || || |||||| |||| ||||| || ||||||||||| Sbjct 78536 ACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTAC 78477 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 ||||||||| || || | | || || | ||| || || || || ||| |||| ||||| Sbjct 78476 GTTTGATGTGTCTATTTTGACCATCGAGGATGGCATTTTTGAGGTCAAGTCTACCGCTGG 78417 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGA 196017 ||| ||||| | |||||||| || ||||| || | | |||||| | ||| Sbjct 78416 TGACACTCACTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCTGA 78357 Query 196018 GTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAG 196077 ||| |||||||| ||||| || || || ||||| | || | ||||| | | Sbjct 78356 GTTTAAGCGAAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 78297 Query 196078 GACTGCATGTGAACGTGCCAAACGAAC 196104 || || |||||||| || ||||| || Sbjct 78296 CACAGCTTGTGAACGAGCGAAACGCAC 78270 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 196448 GTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGT 196507 || |||||||| |||| |||||||| |||| | || ||||| ||||||| || || Sbjct 77782 GTTCAAGATCTGTTGCTTCTTGATGTAACACCTCTTTCGTTGGGTATTGAAACCGCAGGG 77723 Query 196508 GGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGA--ACAAG 196565 |||||||||||| | | ||| | | ||||| || || || || | ||| | |||| Sbjct 77722 GGTGTTATGACTGCACTGATTAAACGCAACACTACCATCCCTAC--AAAAGTATCGCAAG 77665 Query 196566 TCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAAC 196625 | || | || || || || ||||| || || || |||||||| || |||||||| | Sbjct 77664 TGTTCACTACTTACTCGGACAATCAGCCTGGAGTATTAATTCAAGTGTACGAAGGAGAGC 77605 Query 196626 G 196626 | Sbjct 77604 G 77604 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/228 (68%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711 ||||||| ||||| ||||| || || ||| |||| || | ||||||||||| ||| | Sbjct 77505 CTTGGAAAGTTCGAATTGACCGGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAA 77446 Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771 ||| || || || || || || || ||| | ||||| | || | ||||| | || Sbjct 77445 GTTACGTTTGACATTGATGCCAACGGCATTTTGAACGTTTCTGCCGTTGACAAAAGTACT 77386 Query 196772 GG----CAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGA 196827 || |||| | || || ||||| |||||||| || || ||| || ||||| Sbjct 77385 GGTCGTCAAA----ACAAAATCACCATTACTAATGACAAAGGTCGACTTAGCAAAGAGGA 77330 Query 196828 AATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||||| |||||||| | ||| || || | |||| | ||||| || Sbjct 77329 CATTGATCGTATGGTGCGAGAAGCAGATCAATACAAACAGGAAGATGA 77282 >seq1852 Length=8990 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || ||||| || ||||||||||||||||| || || || ||||| | || Sbjct 5662 TATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 5721 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| ||||| || ||||| || ||||| ||||||||||||||||| || ||||| Sbjct 5722 AGACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 5781 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 5782 GCAAAGATTAATCTTTGCAGGTAA 5805 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 6093 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 6152 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || ||||| || || | || | || ||||||||||||||||||||||| || |||| Sbjct 6153 CTGATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 6212 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 6213 AGCAACGATTGATATTTGCTGGTAA 6237 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 6380 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 6439 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || ||||| || || | |||| || ||||||||||| ||||||||||| || |||| Sbjct 6440 CTGATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATC 6499 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 6500 AGCAACGATTGATATTTGCTGGTAA 6524 >seq833 Length=82521 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || ||||| || ||||||||||||||||| || || || ||||| | || Sbjct 79812 TATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 79871 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| ||||| || ||||| || ||||| ||||||||||||||||| || ||||| Sbjct 79872 AGACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 79931 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 79932 GCAAAGATTAATCTTTGCAGGTAA 79955 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 80243 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 80302 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || ||||| || || | || | || ||||||||||||||||||||||| || |||| Sbjct 80303 CTGATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 80362 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 80363 AGCAACGATTGATATTTGCTGGTAA 80387 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 80530 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 80589 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || ||||| || || | |||| || ||||||||||| ||||||||||| || |||| Sbjct 80590 CTGATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATC 80649 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 80650 AGCAACGATTGATATTTGCTGGTAA 80674 >seq684 Length=410242 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | || |||||||| || || || || |||||| ||||| Sbjct 367808 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 367749 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || ||| | ||| ||||||||||| || |||||||| || || ||||| Sbjct 367748 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 367689 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || ||||||||||||||||||| Sbjct 367688 CAGCGACTTATTTTTGCTGGTA 367667 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || ||||| |||||||| ||||| ||||| | || || || | || Sbjct 337886 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 337827 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| || ||||||||||| ||||| |||||||| |||||| Sbjct 337826 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 337767 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 337766 CAACGTTTGATTTTTGCTGGTAA 337744 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | || |||||||| || || || || |||||| ||||| Sbjct 339365 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 339306 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || ||| | ||| ||||||||||| || |||||||| || || ||||| Sbjct 339305 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 339246 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 339245 CAGCGGCTTATTTTTGCTGGTA 339224 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | ||| Sbjct 368149 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCCTCA 368090 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| ||||| ||||| ||||||||||||||| Sbjct 368089 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGATCAG 368030 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || || || ||||||||||| Sbjct 368029 CAGCGTCTGATATTTGCTGGTAA 368007 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | || Sbjct 337603 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 337544 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| || |||||||||||||| |||||||| |||||| Sbjct 337543 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAGGAAGGAATTCCACCAGATCAG 337484 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 337483 CAACGTTTGATATTTGCTGGTA 337462 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || ||||| |||||||| ||||| |||||| | || || || | || Sbjct 366895 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366836 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || |||||||| ||||| |||||||| |||||| Sbjct 366835 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366776 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 366775 CAACGTTTGATATTTGCTGGTA 366754 Score = 120 bits (132), Expect = 4e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | || Sbjct 338734 ATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 338675 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| || |||||||| ||||| |||||||| |||||| Sbjct 338674 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 338615 Query 171982 CAACGACTTATTTTTGCTGGTAAACA 172007 ||||| | || ||||||||||| || Sbjct 338614 CAACGTTTGATATTTGCTGGTAAGCA 338589 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | || Sbjct 337033 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 336974 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| || || |||||||| |||||| Sbjct 336973 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 336914 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 336913 CAACGTTTGATATTTGCTGGTA 336892 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| ||||| ||||| ||||| | || || || | || Sbjct 367180 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 367121 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| || |||||||| ||||| |||||||| |||||| Sbjct 367120 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 367061 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 367060 CAACGTTTGATATTTGCTGGTA 367039 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | ||| Sbjct 339706 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 339647 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| |||| || || | |||| || ||||| ||||| || || |||||||||||||| Sbjct 339646 GACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 339587 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || || |||||||| ||||| Sbjct 339586 CAGCGTCTCATTTTTGCAGGTAA 339564 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || |||||||| ||||| |||||| | || || || | || Sbjct 338170 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 338111 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || | | |||| || ||||||||||| || || |||||||| ||||| Sbjct 338110 GATACAATTGAAATTGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 338051 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 338050 CAACGTTTGATTTTTGCTGGTAA 338028 >seq1033 Length=69817 Score = 129 bits (142), Expect = 8e-25 Identities = 323/485 (67%), Gaps = 8/485 (2%) Strand=Plus/Minus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| || | | |||| ||||||||| ||||| | ||||| || || || |||| Sbjct 53349 GTGTTGGAGTTTTCAAGAATGGTCGTGTAGAAATTATTGCCAATGATCAGGGCAATCGTA 53290 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 || || ||||| || || |||||| || ||| ||||| | || ||| |||| | Sbjct 53289 TTACCCCGTCGTATGTGGCTTTTACACCGGAAGGTGAGCGTCTGATCGGCGATTCCGCGA 53230 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || ||| ||||| || || || || |||||| | |||| | Sbjct 53229 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGAC 53170 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | ||||| |||| | |||| ||| || ||| | | | ||| ||| Sbjct 53169 GAGAATGGTCGGACAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCGTTTACAGT-GTTA 53111 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629 | | || || | || | | || ||||||| |||||| || Sbjct 53110 GAAAAAT--CAAGCAAACCGAACGTTCAACTCACTGTTAACGGTGAAAAGAAATTGTTCA 53053 Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||||||||||||||| | ||||| ||| | || ||||| || | ||| ||| ||| Sbjct 53052 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATT 52993 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 |||| ||| |||||| |||| || || || || |||||||| |||| ||| |||||| Sbjct 52992 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAAC 52933 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAAT 195808 | || || || || || || | | ||||| ||||| || ||| || |||| || || Sbjct 52932 GTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAA-TGTAGTTCGAATCATTAAC 52874 Query 195809 GAACC 195813 ||||| Sbjct 52873 GAACC 52869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 327/506 (65%), Gaps = 10/506 (2%) Strand=Plus/Minus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 || || || || ||||| ||||| || ||||| || || || |||| | | || ||| Sbjct 52106 ATTAATCCTGACGAAGCTGTTGCCTACGGTGCTGCGGTACAAGCTGGCGTAATTTCTGGT 52047 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 | || ||| | || |||||| |||| | ||||| || | | |||| Sbjct 52046 GAAGAAGATACTG--GT----GATCTTGTGCTGTTGGATGTCAATCCGTTGACTTTGGGA 51993 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 ||||||| | || || || ||||| ||| | ||| ||||| || | ||||| Sbjct 51992 ATTGAAACTGTCGGCGGAGTGATGACGAAACTGATTCCCAGGAATACGGTAGTGCCGACC 51933 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 ||||| || | || || | |||| ||||| || ||| ||||||||| Sbjct 51932 AAGAAATCGCAGATATTCAGCACCGCTGCCGACAATCAGCCCACGGTTACTATTCAAGTT 51873 Query 196613 TATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671 | ||||| ||||| || || |||| || || || || ||||| | |||||| | || Sbjct 51872 TTCGAAGGCGAACGA-CCAATGACAAAAGACAATCACCTTCTTGGCAAGTTCGATCTTAC 51814 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || || | || || | ||||| ||||| ||| | || |||||||| || | Sbjct 51813 TGGCATACCTCCGGCTCCTCGCGGTGTGCCACAAATTGAAGTCACATTCGATATTGATGT 51754 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA-AAGATTG 196790 ||||| ||| | ||||||| || || ||||| | | || ||| ||| ||||| Sbjct 51753 GAATGGTATTTTGCACGTCACCGCCGAAGACAAAGGCACCGG-AAACAAGAACAAGATCA 51695 Query 196791 TGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATG 196850 ||||||||||| | || || || ||| || ||||| || ||| | | |||| Sbjct 51694 CAATTACCAATGATCACAACCGTCTGTCACCGGAAGATATTGACCGCATGATCAACGATG 51635 Query 196851 CGGAAAAGTACAGGGAAGAAGACGAG 196876 | || || || ||||| ||| || Sbjct 51634 CCGAGAAATATGCAGAAGAGGACAAG 51609 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/160 (72%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||||||||| |||||||||||||| || ||| ||| |||||| | || Sbjct 52800 AACTGCTGCTGCAATTGCATATGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTT 52744 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| || ||||| ||||| || || | | || | |||||| |||| | Sbjct 52743 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGATAATGGTGT 52684 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 || ||||| ||||| ||||||||||||| | ||| Sbjct 52683 TTTTGAAGTGCTCTCTACTAATGGTGATACTCATTTGGGT 52644 >seq2180 Length=222558 Score = 100 bits (110), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| ||||| |||||| | ||||||||||| |||||||||||||||||||| Sbjct 48814 AGGGATTCCACCTGATCAACAACGATTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 48755 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | || |||||||| |||| ||||| Sbjct 48754 TACATTGGCCGATTACAATATTCAGAAAGG 48725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657841496422240