Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1852 123 4e-23 seq833 123 4e-23 seq684 113 7e-20 >seq1852 Length=8990 Score = 123 bits (136), Expect = 4e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 6382 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 6441 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| |||||| |||||| ||||||||||||||||| || || || || Sbjct 6442 GATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCAG 6501 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 6502 CAACGATTGATATTTGCTGGTAA 6524 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 6095 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 6154 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| |||||| |||||||| |||||||| || || || || Sbjct 6155 GATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 6214 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 6215 CAACGATTGATATTTGCTGGTAA 6237 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || || | |||||||||||||| ||| ||||||| ||| || Sbjct 5663 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 5722 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || |||| |||||| || ||||| |||||||| ||||| || || Sbjct 5723 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 5782 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 |||||||| || | ||| ||||| Sbjct 5783 CAAAGATTAATCTTTGCAGGTAA 5805 >seq833 Length=82521 Score = 123 bits (136), Expect = 4e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 80532 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 80591 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| |||||| |||||| ||||||||||||||||| || || || || Sbjct 80592 GATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCAG 80651 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 80652 CAACGATTGATATTTGCTGGTAA 80674 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 80245 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 80304 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| |||||| |||||||| |||||||| || || || || Sbjct 80305 GATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 80364 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 80365 CAACGATTGATATTTGCTGGTAA 80387 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || || | |||||||||||||| ||| ||||||| ||| || Sbjct 79813 ATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 79872 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || |||| |||||| || ||||| |||||||| ||||| || || Sbjct 79873 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 79932 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 |||||||| || | ||| ||||| Sbjct 79933 CAAAGATTAATCTTTGCAGGTAA 79955 >seq684 Length=410242 Score = 113 bits (124), Expect = 7e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| |||||||| |||||| ||||||| || || Sbjct 367808 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 367749 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| |||| ||| || ||||| ||||||||||| |||||||| ||| Sbjct 367748 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 367689 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || || | |||| ||| |||| Sbjct 367688 CAGCGACTTATTTTTGCTGGTA 367667 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| |||||||| |||||| ||||||| || || Sbjct 339365 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCA 339306 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| |||| ||| || ||||| ||||||||||| |||||||| ||| Sbjct 339305 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 339246 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | | |||| ||| |||| Sbjct 339245 CAGCGGCTTATTTTTGCTGGTA 339224 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| | ||||| ||||| || || || ||||| ||| ||| Sbjct 337886 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 337827 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| |||||||||||||| || || ||||| || Sbjct 337826 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 337767 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAG 155969 ||| | ||||||| ||| |||||| || Sbjct 337766 CAACGTTTGATTTTTGCTGGTAAGTAG 337740 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || | ||||| ||||| || || || ||||| ||| ||| Sbjct 338170 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 338111 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| |||||| ||||||||||| || || || || || ||| Sbjct 338110 GATACAATTGAAATTGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 338051 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAG 155969 ||| | ||||||| ||| |||||| || Sbjct 338050 CAACGTTTGATTTTTGCTGGTAAGTAG 338024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||||||||| |||| || | ||||| ||||| || || || ||||| ||| || Sbjct 338735 AATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATC 338676 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||| || ||| |||||||||||||||||||| || || ||||| || Sbjct 338675 CGACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 338616 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCA 155968 ||| | ||||| | ||| |||||||| Sbjct 338615 GCAACGTTTGATATTTGCTGGTAAGCA 338589 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| | ||||| ||||| || || || ||||| ||| ||| Sbjct 366895 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366836 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || ||| |||||||||||||||||||| || || ||||| || Sbjct 366835 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366776 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 366775 CAACGTTTGATATTTGCTGGTA 366754 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| | ||||| ||||| || || || ||||| ||| ||| Sbjct 366323 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366264 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || ||| |||||||||||||||||||| || || ||||| || Sbjct 366263 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366204 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | ||||| | ||| |||| Sbjct 366203 CAGCGTTTGATATTTGCTGGTA 366182 Score = 89.7 bits (98), Expect = 8e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| |||||| | ||||| | ||||| ||||| ||||| | ||||| |||| Sbjct 368152 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCC 368093 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||| ||||| |||||| || ||||||||||| || || || || Sbjct 368092 TCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGAT 368033 Query 155940 CAACAAAGATTGATTTATGCCGGTAAG 155966 || || | |||| | ||| |||||| Sbjct 368032 CAGCAGCGTCTGATATTTGCTGGTAAG 368006 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||| || || || || || ||||| ||| || Sbjct 366611 AATGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATC 366552 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || ||| |||||||||||||||||||| || || ||||| || Sbjct 366551 CGATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCA 366492 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 || | ||||| | ||| |||| Sbjct 366491 GCAGCGTTTGATATTTGCTGGTA 366469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731848744767200