Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq684 127 4e-24
seq1852 114 2e-20
seq833 114 2e-20
>seq684
Length=410242
Score = 127 bits (140), Expect = 4e-24
Identities = 118/150 (79%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980
||||| ||||||||||| || || | || || || ||||| ||||||||||||||||||
Sbjct 338586 AATTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGT 338645
Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040
||||| ||||||||| ||| || || || | ||| ||||| | ||| ||||||||
Sbjct 338646 ATTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTG 338705
Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | || |||| |||||| ||||||
Sbjct 338706 CCAGTGAGGGTCTTAACGAATATTTGCATT 338735
Score = 123 bits (136), Expect = 5e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| |||||||| | | |||||| || ||||| ||||| |||||||| || ||||||
Sbjct 339564 TTACCTGCAAAAATGAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 339623
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||||||||| || | ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 339624 CCTTTTACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 339683
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 339684 AGAGTTTTCACAAATATCTGCATTTT 339709
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || || | ||| || || ||||| |||||||||||||||||||||||
Sbjct 366182 TACCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 366241
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||| ||||| | || |||||||| ||||| |
Sbjct 366242 CTTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAA 366301
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||||| ||| || |||||
Sbjct 366302 GCGTTTTAACGAAAATTTGCAT 366323
Score = 120 bits (132), Expect = 5e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || | | ||| || || ||||| |||||||||||||| || ||||||
Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || || ||||| | ||| ||||| |||||||||||||| |||||
Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
| ||||| | ||||||||||||||
Sbjct 368127 AGAGTTTTCACAAATATCTGCATTTT 368152
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| || | || || || ||||| ||||||||||||||||| ||||||
Sbjct 337744 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTA 337803
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| ||| || || || | ||| ||||| | ||| |||||||| |||||
Sbjct 337804 CCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 337863
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| ||||||| ||| || |||||
Sbjct 337864 AGCGTTTTAACGAAAATTTGCAT 337886
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || || | || || || ||||| |||||||||||||||||||||||
Sbjct 366754 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 366813
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| ||||| || | ||| ||||| | || |||||||| ||||| |
Sbjct 366814 CTTTTACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTAA 366873
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||||| ||| || |||||
Sbjct 366874 GCGTTTTAACGAAAATTTGCAT 366895
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | || |||||| || || || || |||||||| ||||| || |||
Sbjct 367667 TACCAGCAAAAATAAGTCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 367726
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||| || || |||||||||| || |||||||| ||||| ||||| || || |
Sbjct 367727 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 367786
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| || || | |||||||||||
Sbjct 367787 ACGTCTTCACAAATATCTGCAT 367808
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || || | || || || ||||| |||||||| ||||||||||||||
Sbjct 337462 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTATTTTGC 337521
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| || || || | ||||||||| | ||| |||||||| ||||| |
Sbjct 337522 CTTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGA 337581
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 337582 GGGTCTTAACGAAAATTTGCATT 337604
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || || | ||| || || ||||| |||||||||||||||||||||||
Sbjct 366469 TACCAGCAAATATCAAACGCTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 366528
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| || ||||| || | ||| ||||| | ||| ||||| || ||||| |
Sbjct 366529 CTTTTACATTTTCAATTGTATCGGATGGTTCCACTTCCAAAGTGATGGTCTTGCCAGTAA 366588
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 366589 GAGTCTTAACGAAAATTTGCATT 366611
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || || | || || || ||||| |||||||||||||||||||||||
Sbjct 367039 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGC 367098
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| || || || | ||| ||||| | ||| |||||||| ||||| |
Sbjct 367099 CTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGA 367158
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 367159 GGGTCTTAACGAAAATTTGCATT 367181
Score = 113 bits (124), Expect = 8e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| | | |||||| || || || || |||||||| ||||| || |||
Sbjct 339224 TACCAGCAAAAATAAGCCGCTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTAC 339283
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||| || || |||||||||| || |||||||| ||||| ||||| || || |
Sbjct 339284 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCTAGTGTAATCGTTTTTCCTGTCA 339343
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| || || | |||||||||||
Sbjct 339344 ACGTCTTCACAAATATCTGCAT 339365
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
|||||||||| || || | || || || ||||| ||||| ||||||||||| |||||
Sbjct 336892 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 336951
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||||||||| ||| || || || | ||||||||| | ||| |||||||| ||||| |
Sbjct 336952 CTTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGA 337011
Query 172048 ATGTTTTAATGAATATCTGCATT 172070
|| |||| ||| || ||||||
Sbjct 337012 GGGTCTTAACGAAAATTTGCATT 337034
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
|||||||||||||| || | ||||| || ||||| ||||| ||||||||||| ||||||
Sbjct 338028 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 338087
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||| | || ||||| || | ||| ||||| | || |||||||| |||||
Sbjct 338088 CCTTTCACAATTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATGGTTTTCCCAGTA 338147
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| || |||| ||| || |||||
Sbjct 338148 AGCGTCTTAACGAAAATTTGCAT 338170
>seq1852
Length=8990
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| ||||| |||||||| || || ||||| || || ||||| ||||| || ||||||
Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| ||||| || || ||||| | ||| |||||||| || || ||||| |||||
Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| || || | ||||||||||||
Sbjct 5685 AGAGTCTTCACGAATATCTGCAT 5663
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || |||| || || ||||| || || |||||||||||||| ||||||
Sbjct 6524 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 6465
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| || ||||| || | |||||||| | || || ||||| ||||||
Sbjct 6464 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6405
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|||||||| | || ||||||||
Sbjct 6404 AATGTTTTCACAAAAATCTGCAT 6382
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || |||| || || ||||| || || ||||| |||||||| ||||||
Sbjct 6237 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 6178
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || ||||| || | |||||||| | || || ||||| ||||||
Sbjct 6177 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 6118
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|||||||| | || ||||||||
Sbjct 6117 AATGTTTTCACAAAAATCTGCAT 6095
>seq833
Length=82521
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| ||||| |||||||| || || ||||| || || ||||| ||||| || ||||||
Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|||| ||||| || || ||||| | ||| |||||||| || || ||||| |||||
Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
| || || | ||||||||||||
Sbjct 79835 AGAGTCTTCACGAATATCTGCAT 79813
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || |||| || || ||||| || || |||||||||||||| ||||||
Sbjct 80674 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCTTTATCTTGAATTTTA 80615
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||| ||||| || ||||| || | |||||||| | || || ||||| ||||||
Sbjct 80614 CCTTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80555
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|||||||| | || ||||||||
Sbjct 80554 AATGTTTTCACAAAAATCTGCAT 80532
Score = 105 bits (116), Expect = 1e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||||||||| || |||| || || ||||| || || ||||| |||||||| ||||||
Sbjct 80387 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 80328
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || ||||| || | |||||||| | || || ||||| ||||||
Sbjct 80327 CCCTTCACATTTTCAATTGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 80268
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|||||||| | || ||||||||
Sbjct 80267 AATGTTTTCACAAAAATCTGCAT 80245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905107239303600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |