Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq684 105 6e-18
>seq684
Length=410242
Score = 105 bits (116), Expect = 6e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||| ||| | ||
Sbjct 338734 ATGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 338675
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||||| |||||| || || ||||| ||||||||||| || || |||||
Sbjct 338674 GACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 338615
Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849
||||||||||| ||||| || || ||
Sbjct 338614 CAACGTTTGATATTTGCTGGTAAGCA 338589
Score = 105 bits (116), Expect = 6e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || || || ||||| ||||| || ||||| |||||| |
Sbjct 368149 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCCTCA 368090
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | |||| || || || || || || ||||||||||| || ||||||||
Sbjct 368089 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGATCAG 368030
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|| ||| |||| ||||| || ||
Sbjct 368029 CAGCGTCTGATATTTGCTGGTAA 368007
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||||||||| || || ||||| || || | ||||| ||| | |
Sbjct 366895 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366836
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||||| |||||| || || ||||| ||||||||||| || || |||||
Sbjct 366835 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366776
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 366775 CAACGTTTGATATTTGCTGG 366756
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | ||
Sbjct 337033 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 336974
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | |||||| || || ||||| ||||| ||||| || || |||||
Sbjct 336973 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 336914
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 336913 CAACGTTTGATATTTGCTGG 336894
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||||||| | ||
Sbjct 337603 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTAGAACCATCC 337544
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | |||||| || || ||||| || |||||||| || || |||||
Sbjct 337543 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAGGAAGGAATTCCACCAGATCAG 337484
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 337483 CAACGTTTGATATTTGCTGG 337464
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||||||||| || || ||||| || || | ||||| ||| | |
Sbjct 337886 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAACCATCT 337827
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | || ||| || || ||||| ||||||||||| || || |||||
Sbjct 337826 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 337767
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| ||||| || ||
Sbjct 337766 CAACGTTTGATTTTTGCTGGTAA 337744
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || |
Sbjct 339706 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 339647
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||| || | |||| |||||| || || || || ||||| ||||| || |||||||||
Sbjct 339646 GACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 339587
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
|| ||| | || ||||| || ||
Sbjct 339586 CAGCGTCTCATTTTTGCAGGTAA 339564
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||||||||| || || ||||| || || | ||||| ||| | |
Sbjct 366323 ATGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 366264
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| |||||| |||||| || || ||||| ||||||||||| || || |||||
Sbjct 366263 GATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366204
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| |||||||| ||||| ||
Sbjct 366203 CAGCGTTTGATATTTGCTGG 366184
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || ||||| || || | ||||| ||| | ||
Sbjct 367180 ATGCAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCC 367121
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| |||| | |||||| || || ||||| ||||||||||| || || |||||
Sbjct 367120 GACACAATAGAGAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 367061
Query 24824 CAACGTTTGATCTTTGCCGG 24843
||||||||||| ||||| ||
Sbjct 367060 CAACGTTTGATATTTGCTGG 367041
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || ||| | || || ||||| ||||| || ||||| || | |
Sbjct 339366 GATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTC 339307
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| | || | |||||| ||||| |||||||||||||| || ||||| |||||
Sbjct 339306 AGATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCA 339247
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| || | || ||||| ||
Sbjct 339246 ACAGCGGCTTATTTTTGCTGG 339226
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || ||| | || || ||||| ||||| || ||||| || | |
Sbjct 367809 GATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTC 367750
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| | || | |||||| ||||| |||||||||||||| || ||||| |||||
Sbjct 367749 AGATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCA 367690
Query 24823 ACAACGTTTGATCTTTGCCGG 24843
||| || | || ||||| ||
Sbjct 367689 ACAGCGACTTATTTTTGCTGG 367669
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| ||||| || || ||||| || || | ||||| ||| | |
Sbjct 338170 ATGCAAATTTTCGTTAAGACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCT 338111
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| || ||| || || ||||| ||||| ||||| || || ||||||
Sbjct 338110 GATACAATTGAAATTGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 338051
Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846
||||||||||| ||||| || ||
Sbjct 338050 CAACGTTTGATTTTTGCTGGTAA 338028
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || |||| || || || || || || || || | ||||| ||| | ||
Sbjct 366610 ATGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATCC 366551
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| ||| | |||| |||||| || || ||||| ||||||||||| || || |||||
Sbjct 366550 GATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAG 366491
Query 24824 CAACGTTTGATCTTTGCCGG 24843
|| |||||||| ||||| ||
Sbjct 366490 CAGCGTTTGATATTTGCTGG 366471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449883304503760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |