Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1852 107 3e-18 seq833 107 3e-18 seq684 104 4e-17 >seq1852 Length=8990 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 6383 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 6442 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| ||| ||||||||||||||| || ||||| | Sbjct 6443 ATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCAGC 6502 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 6503 AACGATTGATATTTGCTGGTAA 6524 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 6096 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 6155 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || |||||| ||| ||| ||||||||||| || ||||| | Sbjct 6156 ATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 6215 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 6216 AACGATTGATATTTGCTGGTAA 6237 Score = 93.3 bits (102), Expect = 7e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| |||||| | || || | || |||||||| || || | || || |||| || | Sbjct 5664 TGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 5722 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||| |||| |||||| || ||| ||||||||||| || ||||| Sbjct 5723 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 5782 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 |||||| | || ||||||||||| Sbjct 5783 CAAAGATTAATCTTTGCAGGTAA 5805 >seq833 Length=82521 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 80533 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 80592 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| ||| ||||||||||||||| || ||||| | Sbjct 80593 ATACAATTGAAAATGTGAAAGGTAAAATTCAAGATAAAGAAGGCATTCCGCCTGATCAGC 80652 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 80653 AACGATTGATATTTGCTGGTAA 80674 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 80246 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 80305 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || |||||| ||| ||| ||||||||||| || ||||| | Sbjct 80306 ATACAATTGAAAATGTGAAGGGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 80365 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 80366 AACGATTGATATTTGCTGGTAA 80387 Score = 93.3 bits (102), Expect = 7e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| |||||| | || || | || |||||||| || || | || || |||| || | Sbjct 79814 TGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 79872 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||| |||| |||||| || ||| ||||||||||| || ||||| Sbjct 79873 GACACCATCGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 79932 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 |||||| | || ||||||||||| Sbjct 79933 CAAAGATTAATCTTTGCAGGTAA 79955 >seq684 Length=410242 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 339705 TGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 339646 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| ||||||||||| |||||| || |||||| || |||||||||||||||| Sbjct 339645 ACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 339586 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | | ||||||||||||||||| Sbjct 339585 AGCGTCTCATTTTTGCAGGTAA 339564 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | || || ||||| || ||| | || || |||| || Sbjct 338733 TGCAAATATTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCG 338674 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||||||| ||||||||| ||||||||| |||||||| ||||| | Sbjct 338673 ACACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGC 338614 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTA 146180 || | | || ||||| ||||| |||||| Sbjct 338613 AACGTTTGATATTTGCTGGTAAGCAATTA 338585 Score = 93.3 bits (102), Expect = 7e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || ||||||||||| ||||| | || || || | | Sbjct 367807 TGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCAG 367748 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || ||||||| ||| || ||| ||||||||||| || || ||||||| Sbjct 367747 ATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAAC 367688 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | |||| |||||||| |||| Sbjct 367687 AGCGACTTATTTTTGCTGGTA 367667 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || ||||||||||| ||||| | || || || | | Sbjct 339364 TGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCAG 339305 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || ||||||| ||| || ||| ||||||||||| || || ||||||| Sbjct 339304 ATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAAC 339245 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 339244 AGCGGCTTATTTTTGCTGGTA 339224 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || || || || ||| | || || |||| || Sbjct 366609 TGCAAATTTTCGTTAAGACTCTTACTGGCAAGACCATCACTTTGGAAGTGGAACCATCCG 366550 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| ||||||||| ||||||||| |||||||| ||||| | Sbjct 366549 ATACAATTGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGC 366490 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | | || ||||| |||| Sbjct 366489 AGCGTTTGATATTTGCTGGTA 366469 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| || || | || || |||| | Sbjct 366894 TGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCTG 366835 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||||||| ||||||||| |||||||| ||||| | Sbjct 366834 ATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGC 366775 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || | | || ||||| |||| Sbjct 366774 AACGTTTGATATTTGCTGGTA 366754 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| || || | || || |||| | Sbjct 366322 TGCAAATTTTCGTTAAAACGCTTACTGGGAAAACCATCACCTTGGAAGTGGAACCATCTG 366263 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||||||| ||||||||| ||||||||| |||||||| ||||| | Sbjct 366262 ATACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGC 366203 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | | || ||||| |||| Sbjct 366202 AGCGTTTGATATTTGCTGGTA 366182 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| ||||| | ||||| | || || ||||| |||||| | || || ||| | | | Sbjct 368148 TGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAAGCCTCA- 368090 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| ||||||| || |||||| || ||||||||| |||||||||||||| Sbjct 368089 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAAGGAATTCCACCCGATCAG 368030 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 || | || || ||||| ||||| Sbjct 368029 CAGCGTCTGATATTTGCTGGTAA 368007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786141419562640