Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq684 127 2e-24 seq1852 105 5e-18 seq833 105 5e-18 >seq684 Length=410242 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 ||| || |||||| ||||||| | ||||||||| || ||||| || ||||| ||||||| Sbjct 338588 TTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTAT 338647 Query 29700 TTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 ||| ||| ||| |||||| ||||| || |||| ||||| | ||| || |||||||| Sbjct 338648 TTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCC 338707 Query 29760 AGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | ||| ||||| ||||| |||||| Sbjct 338708 AGTGAGGGTCTTAACGAATATTTGCATT 338735 Score = 120 bits (132), Expect = 2e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| ||||||| | ||||||||| || ||||| |||||||| ||||| | ||| | Sbjct 336894 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 336953 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| | |||| ||||| || |||||||||| | ||| || ||||||||||| | | Sbjct 336954 TTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337013 Query 29767 GTTTTAACAAATATCTGCATT 29787 || ||||| || || |||||| Sbjct 337014 GTCTTAACGAAAATTTGCATT 337034 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| ||||||| | ||||||||| || ||||| || || || ||||||| ||| | Sbjct 337464 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGTATTTTGCCT 337523 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| | |||| ||||| || |||||||||| | ||| || ||||||||||| | | Sbjct 337524 TTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337583 Query 29767 GTTTTAACAAATATCTGCATT 29787 || ||||| || || |||||| Sbjct 337584 GTCTTAACGAAAATTTGCATT 337604 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| ||||||| | ||||||||| || ||||| || ||||| ||||||| ||| | Sbjct 367041 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTATTTTGCCT 367100 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| | |||| ||||| || |||| ||||| | ||| || ||||||||||| | | Sbjct 367101 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 367160 Query 29767 GTTTTAACAAATATCTGCATT 29787 || ||||| || || |||||| Sbjct 367161 GTCTTAACGAAAATTTGCATT 367181 Score = 105 bits (116), Expect = 5e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | ||||| | |||||||| || ||||| |||||||| || |||| ||| | Sbjct 337176 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 337235 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||||| ||||| || |||| ||||| | ||| || ||||||||||| | | Sbjct 337236 TTCACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAGG 337295 Query 29767 GTTTTAACAAATATCTGCATT 29787 || ||||| || || |||||| Sbjct 337296 GTCTTAACGAAAATTTGCATT 337316 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| |||||| | |||||||| || ||||| || ||||| || || | ||| Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| |||| | ||||| || ||| ||||| ||||| || ||||| ||||| Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126 Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789 | ||||| ||||||||||||||||| Sbjct 368127 AGAGTTTTCACAAATATCTGCATTTT 368152 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTG 29724 || ||||| || ||||| |||||||| || || | ||| ||| ||| |||| | | | Sbjct 339585 TGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTACCTTTTACATTTTCAATTGAG 339644 Query 29725 TCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || || |||| ||||| ||||| || ||||| ||||| | ||||| |||||||||||| Sbjct 339645 TCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGC 339704 Query 29785 ATTTT 29789 ||||| Sbjct 339705 ATTTT 339709 >seq1852 Length=8990 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || |||||||||||||| || ||||| || || || || || | ||| Sbjct 5805 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 5746 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||||| |||| | ||||| || |||| ||||| || ||||||||||| ||||| Sbjct 5745 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 5686 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || || ||||||||||| Sbjct 5685 AGAGTCTTCACGAATATCTGCAT 5663 >seq833 Length=82521 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || |||||||||||||| || ||||| || || || || || | ||| Sbjct 79955 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 79896 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||||| |||| | ||||| || |||| ||||| || ||||||||||| ||||| Sbjct 79895 CTTTTGACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 79836 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || || ||||||||||| Sbjct 79835 AGAGTCTTCACGAATATCTGCAT 79813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385207265668422