Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq265 345 3e-89 seq1033 150 1e-30 seq118 107 1e-17 seq147 89.7 4e-12 >seq265 Length=128937 Score = 345 bits (382), Expect = 3e-89 Identities = 497/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Plus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 78373 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGA 78432 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 | | |||| ||||| || | | ||||| || |||||| || |||||||| | | Sbjct 78433 CCTCAAAAATGCCATCCTCGATGGTCAAAATAGACACATCAAACGTACCACCACCAAGGT 78492 Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 78493 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 78552 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 | || |||||||| || ||||||| ||||||||| | ||||| ||| |||| || |||| Sbjct 78553 CCGCTGTTGGTTCGTTGATAATTCGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 78612 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 | || || || | || ||||||||||||||||| ||||||||||| ||||| || | | Sbjct 78613 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCGTCCTTAA 78672 Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | |||||| | |||||| || |||| ||||| || ||| | ||| | | Sbjct 78673 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTGA 78732 Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 ||| ||| || | | || ||| || || || ||| |||| || | ||||| Sbjct 78733 TTTCTTCCGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 78792 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 | ||| |||| ||||||||||||||||||| |||||| || || || ||| |||| Sbjct 78793 TTCCATCATTGATAACTTTAAATGGCCAATGTTTCATGTCAGACTGCACAGCAGCATCAT 78852 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 78853 CAAATCGACGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 78912 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 | |||| || || ||||| |||||||| |||| || || || || | |||||| || Sbjct 78913 CCTGATTCTTTGCCGCATCGCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 78972 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 78973 GCGTGGTACGATTCCCTTGATCGTTTGCAATAATTTCAACTTTACCATGCTGGAACACGC 79032 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | |||||||| | || || || |||||||| ||||||||| Sbjct 79033 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 79073 Score = 132 bits (146), Expect = 4e-25 Identities = 200/282 (71%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 ||| | || ||||| || |||||||| |||||||| | ||| || |||| ||| ||| Sbjct 77903 ATACCTGCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCA 77962 Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 |||||||||| ||| || || || | || |||||||| |||| ||||| || || || Sbjct 77963 TTGAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 78021 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 ||||| |||||| | | || ||| |||| ||| | ||| | | ||||||| || || Sbjct 78022 TACAACTTCATGAATCACTGCTTTGTCCAATTTCGCATCACGAAGAGCTTTTTCTACTGG 78081 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 ||| | | || | |||||||| | | |||||||| || ||||| |||| ||| Sbjct 78082 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATAGT 78141 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051 | | ||||||| |||||| | | | ||||| ||| || Sbjct 78142 GGTGTAGAAATCAATGCCTTCGTAGAGACTATCAATTTCTAT 78183 >seq1033 Length=69817 Score = 150 bits (166), Expect = 1e-30 Identities = 346/513 (67%), Gaps = 20/513 (4%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| ||||| |||| | ||||||||||||||||| | || |||||||| || ||| Sbjct 52869 GGTTCGTTAATGATTCGAACTACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 52928 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||||| |||||| ||||| |||||||| || | ||||||| | | |||||||| Sbjct 52929 TGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTTG 52988 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 52989 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 53048 Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 |||| | ||| ||| |||| | | | | || || | ||||| | Sbjct 53049 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTGAGTTGAACGTTCGGTTTGCT--TG 53103 Query 282605 ACATTAATA--ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAA 282662 | || || ||| |||| ||||| ||| ||| | ||||| ||| | ||| Sbjct 53104 ATTTTTCTAACACTGTAAACGGCCACATTTTACGATCCGCTTGAAGACTCTTGTCCGACC 53163 Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCT 282721 | |||| |||| | || || ||||| || | ||||| ||||| | || | Sbjct 53164 ATTCTCGTCCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC- 53222 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGAT 282778 |||| ||| || | ||| || |||||| | | || | |||||| | ||||| || Sbjct 53223 TGATTTTTCGCGGAATCGCCGATCAGACGCTCACCTTCCGGTGTAAAAGCCACATACGAC 53282 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 282838 || || | ||||| || |||||||| ||||||||||| || |||||| | | || Sbjct 53283 GGGGTAATACGATTGCCCTGATCATTGGCAATAATTTCTACACGACCATTCTTGAAAACT 53342 Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 || || ||||||| || || ||| |||||| Sbjct 53343 CCAAC---ACTAAAAATTATT--TAATTCAATA 53370 >seq118 Length=147998 Score = 107 bits (118), Expect = 1e-17 Identities = 125/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | |||||||| Sbjct 17010 TATATTTGTGGTACAGATGAATATGGCACTGCCACAGAGACAAAAGCTATTGAGGAAGGT 17069 Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736 || ||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 17070 GTGACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 17129 Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACAG 607784 |||||||| |||||||| ||||||| | | | |||||| ||||| Sbjct 17130 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAGAACAG 17174 >seq147 Length=144011 Score = 89.7 bits (98), Expect = 4e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 164595 TACAGGACTGTTTGGGAAATTCCTCAAAAATCCATCATTGAAATGGCAGCTGATAGAGCA 164654 |||| ||| |||||||||||| | ||||||| | |||| || ||||| || || || | | Sbjct 32574 TACAAGACGGTTTGGGAAATTTCCCAAAAATGCGTCATAGACATGGCTGCCGAAAGGGGA 32633 Query 164655 CCTTTTGTTGATCAAACACAGAGTATGAATTTGTACATTGATAAACCTAGTTTTGCAAGA 164714 |||| |||| ||| | ||| ||||| | |||||| | || | | ||| | | Sbjct 32634 GCTTTCATTGACCAATCCCAGTCGTTGAATATTCACATTGCCGAGCCCAACTATGCTAAA 32693 Query 164715 TTAAATTCTTGTCTATTTTATGCATGGAGGAAAGGTCTCAAAACCGGTATGTATTATTTG 164774 || | || | || || | |||| || |||||| ||||| || ||||| |||||| Sbjct 32694 TTGACGTCGATGCATTTCTACGGCTGGAAGAGAGGTCTGAAAACTGGGATGTACTATTTG 32753 Query 164775 AGATCTAAACCAGC 164788 ||| | || ||||| Sbjct 32754 AGAACCAAGCCAGC 32767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740505598542492