Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq684 95.1 1e-14 seq2463 87.8 2e-12 seq147 82.4 7e-11 >seq684 Length=410242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 137265 TTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAAT 137324 ||| ||||||||| | |||| |||||||||||| || || || |||||||| || || Sbjct 338588 TTGCTTACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGTAT 338647 Query 137325 TTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCC 137384 ||| ||||| | ||| | ||||| | ||||| ||||| | ||| | || ||||| Sbjct 338648 TTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGCC 338707 Query 137385 GGTCAATGTTTTTACGAATATTTGCAT 137411 || | || || |||||||||||||| Sbjct 338708 AGTGAGGGTCTTAACGAATATTTGCAT 338734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||||||| | |||||||| ||||||||||| || || |||||||| || |||||| Sbjct 368007 TTACCAGCAAATATCAGACGCTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTA 368066 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | ||| | ||||||| || ||| ||||| | ||| | || || || || Sbjct 368067 CCCTTCACATTTTCAATTGTGTCTGAGGCTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 368126 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| || ||||| ||||| Sbjct 368127 AGAGTTTTCACAAATATCTGCAT 368149 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 137270 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 137329 |||||||| | |||| |||||||||||| || || || || ||||| || |||||| Sbjct 336892 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGC 336951 Query 137330 GTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 137389 ||||| | || | ||||| | ||||||||||| | ||| | || ||||| || | Sbjct 336952 CTTTTACATTCTCTATTGTGTCGGATGGTTCTACTTCCAAAGTGATGGTTTTGCCAGTGA 337011 Query 137390 ATGTTTTTACGAATATTTGCAT 137411 || || ||||| |||||||| Sbjct 337012 GGGTCTTAACGAAAATTTGCAT 337033 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||||||| | |||| |||||||||||| || || || |||||||| || |||||| Sbjct 337744 TTACCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTA 337803 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | ||||| | ||||| ||||| | ||| | || || || || Sbjct 337804 CCTTTCACATTCTCTATTGTGTCAGATGGTTCCACTTCCAAAGTGATGGTTTTCCCAGTA 337863 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| ||||| |||||||| Sbjct 337864 AGCGTTTTAACGAAAATTTGCAT 337886 >seq2463 Length=168562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256 ||||||| | || | |||||||||||| ||||| | |||||||| ||| |||| Sbjct 99886 TCAACGCAATTGAAACGATTCCGTGTGTGAAGAAAAAAGCAGATTGGGCTTTGCGTTGGA 99945 Query 50257 C---TaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAG 50313 | | | || || | ||| |||||||||| || ||||| || ||||||| Sbjct 99946 TCGGTGACCGCCAATCACC-ATTTT--CCGAACGTTTGGTTGCGTTCGCAGCTGTTGAAG 100002 Query 50314 GTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGC 50373 || | || |||||||| ||||| || | || || | | |||| |||| | |||| Sbjct 100003 GTATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGC 100062 Query 50374 CCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGA 50413 |||| | || || |||||||||||||| || || ||||| Sbjct 100063 CCGGTTTGACCTTCAGCAACGAGTTGATCTCTCGTGACGA 100102 >seq147 Length=144011 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 150410 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 150469 ||||||||||| || ||||| || || | |||||| ||||| | |||| ||||| || | Sbjct 32752 AAATAGTACATCCCAGTTTTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAAT 32693 Query 150470 TTAGGCAAAGTAGGG-TTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGC 150528 ||| ||| ||| ||| | || |||| | || ||||| || ||| || || || || Sbjct 32692 TTA-GCATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGC 32634 Query 150529 TCCCCTGTCTGCTGCCATTTCAAT 150552 |||||| || || ||||| || || Sbjct 32633 TCCCCTTTCGGCAGCCATGTCTAT 32610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488528476514400