Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq781 89.7 9e-13 >seq781 Length=403579 Score = 89.7 bits (98), Expect = 9e-13 Identities = 191/283 (67%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 143020 TAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAG 143079 || |||| || ||||||| ||| |||| | || ||||| || |||||| || | | Sbjct 210824 TACAACTAAGACGATGGGCAGATATTTTGGTGATTGCGCCATTGGACGCAAATTCGATGG 210883 Query 143080 CAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 143139 | ||||| |||| || || || ||||||||| ||||| | | || ||||| |||||| Sbjct 210884 CGAAAATTTCCAATGGAATTTGTGATAATTTATTAACAAGTGTGGTTAGAGCTTGGGATT 210943 Query 143140 TAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTA 143199 || || | | | |||||||| ||||||| | ||||||||||| || || | Sbjct 210944 GTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACATGTGGGAACACCCGATAA 211003 Query 143200 CAGAAAAACATAT--AGATGCTTTAAAACAT-ATGGGTTTCATAGAAATAGAATGCATAG 143256 | | | || || | | ||| |||| | | || |||| |||| | ||||| | Sbjct 211004 CGTATGACCAGATGGACAAGCTGAAAAATTTGTTTGGATTCAAAGAAGTTCCTTGCATCG 211063 Query 143257 aaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299 | || || || ||||| ||| || ||||||||||||| Sbjct 211064 AGAAGGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 211106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903382494109120