Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq781 89.7 9e-13
>seq781
Length=403579
Score = 89.7 bits (98), Expect = 9e-13
Identities = 191/283 (67%), Gaps = 3/283 (1%)
Strand=Plus/Plus
Query 143020 TAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAG 143079
|| |||| || ||||||| ||| |||| | || ||||| || |||||| || | |
Sbjct 210824 TACAACTAAGACGATGGGCAGATATTTTGGTGATTGCGCCATTGGACGCAAATTCGATGG 210883
Query 143080 CAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 143139
| ||||| |||| || || || ||||||||| ||||| | | || ||||| ||||||
Sbjct 210884 CGAAAATTTCCAATGGAATTTGTGATAATTTATTAACAAGTGTGGTTAGAGCTTGGGATT 210943
Query 143140 TAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTA 143199
|| || | | | |||||||| ||||||| | ||||||||||| || || |
Sbjct 210944 GTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACATGTGGGAACACCCGATAA 211003
Query 143200 CAGAAAAACATAT--AGATGCTTTAAAACAT-ATGGGTTTCATAGAAATAGAATGCATAG 143256
| | | || || | | ||| |||| | | || |||| |||| | ||||| |
Sbjct 211004 CGTATGACCAGATGGACAAGCTGAAAAATTTGTTTGGATTCAAAGAAGTTCCTTGCATCG 211063
Query 143257 aaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299
| || || || ||||| ||| || |||||||||||||
Sbjct 211064 AGAAGGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 211106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903382494109120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |