Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq147 84.2 5e-11
>seq147
Length=144011
Score = 84.2 bits (92), Expect = 5e-11
Identities = 170/249 (68%), Gaps = 4/249 (2%)
Strand=Plus/Plus
Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802
||||| ||| | ||||| | ||| | ||||||||||| |||| |||||||| ||
Sbjct 31084 AGAGACCTGGGGCGTTTGCGGTTTATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 31143
Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860
| || || |||| | || ||| | |||||| | ||||| | ||||| ||||| ||
Sbjct 31144 TTGA--CGCGAAAAAGAACACAGGCATCGAAGAAAACAGAGCCAGAGATTTGTTTTACGC 31201
Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920
| ||||| | ||| |||||||||| || || ||| | || ||||| || ||
Sbjct 31202 CCTTTGGATACCTGATCTATTCATGAAGCGCATTGAAGCTGACGGAGATTGGTCACTGAT 31261
Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980
||| |||||| | ||| || | | ||| | | || | ||||||||| | | ||
Sbjct 31262 GTGCCCTCATGAATGTCCAGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 31321
Query 110981 CGAAAAATA 110989
|||||| ||
Sbjct 31322 CGAAAAGTA 31330
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186774146248862
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |